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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38 		2
 22,835 by rmoretti
Thu, 2024-06-20 11:15
Normal topic Minimizing a Symmetric Structure
by ammar.x.gilani » Wed, 2023-08-02 11:10 		0
 392 by ammar.x.gilani
Wed, 2023-08-02 11:10
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02 		0
 1,742 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57 		0
 3,003 by ajasja
Wed, 2014-09-24 08:57
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43 		0
 1,886 by jwillis
Mon, 2014-04-21 06:47
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20 		0
 1,148 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Set torsions for atoms in different residues
by mluengo » Fri, 2023-05-12 03:07 		0
 442 by mluengo
Fri, 2023-05-12 03:07
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54 		0
 1,732 by jurkm
Mon, 2014-04-21 06:47
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26 		0
 1,006 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26 		0
 1,955 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50 		0
 1,464 by ac.research
Thu, 2018-03-29 07:50
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57 		0
 1,720 by batch2k
Mon, 2014-04-21 06:47
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04 		0
 2,212 by srballard
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54 		0
 1,741 by sid
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57 		0
 1,922 by sharang
Mon, 2014-04-21 06:47
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33 		0
 2,013 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44 		0
 1,157 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24 		0
 1,836 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39 		0
 893 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06 		0
 1,621 by sylvia
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30 		0
 2,217 by xfliu
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22 		0
 2,234 by ast
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38 		0
 1,313 by matteoferla
Sun, 2020-03-01 02:38
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39 		0
 1,894 by blubbi
Mon, 2014-04-21 06:47
Normal topic London
by MarkW » Sun, 2015-02-08 14:14 		0
 2,087 by MarkW
Sun, 2015-02-08 14:14
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13 		0
 1,893 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02 		0
 1,653 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51 		0
 1,316 by nleroy
Mon, 2019-07-22 07:51
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37 		0
 1,754 by tevang
Mon, 2014-04-21 06:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34 		0
 1,203 by publicclass
Thu, 2020-11-05 09:34
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37 		0
 1,334 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50 		0
 2,121 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58 		0
 1,830 by cbala
Mon, 2014-04-21 06:47
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00 		0
 1,096 by mm
Wed, 2020-07-22 03:02
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16 		0
 1,863 by sharang
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51 		0
 1,809 by Sergey
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36 		0
 1,666 by Victor
Mon, 2014-04-21 06:47
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44 		0
 1,503 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43 		0
 786 by Roberto
Thu, 2022-01-06 01:43
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58 		0
 1,887 by Sergey
Mon, 2014-04-21 06:47
Normal topic Gunn fragment insertion
by jadolfbr » Sun, 2010-02-28 09:39 		0
 1,773 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50 		0
 2,269 by matteoferla
Wed, 2021-04-07 06:50
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36 		0
 1,773 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29 		0
 1,385 by tschiex
Sun, 2017-11-05 08:29
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29 		0
 2,988 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02 		0
 1,134 by jetu20
Sun, 2020-10-11 21:02
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29 		0
 1,220 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00 		0
 2,317 by sid
Mon, 2014-04-21 06:47
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56 		1
 2,471 by rmoretti
Fri, 2015-04-24 13:17
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02 		1
 21,605 by embl-structures
Mon, 2014-04-21 06:47
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20 		1
 2,638 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53 		1
 2,722 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21 		1
 2,459 by smlewis
Mon, 2014-04-21 06:47
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13 		1
 1,300 by matteoferla
Mon, 2022-01-10 07:14
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36 		1
 3,465 by smlewis
Mon, 2014-04-21 06:47
Normal topic Folding Video
by ac.research » Sat, 2018-05-12 09:19 		1
 2,113 by rmoretti
Sat, 2018-06-30 02:38
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51 		1
 2,804 by rmoretti
Mon, 2014-04-21 06:48
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44 		1
 2,755 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43 		1
 3,140 by cossio
Fri, 2014-11-28 05:05
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30 		1
 3,061 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00 		1
 2,034 by rmoretti
Wed, 2019-07-10 10:17
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50 		1
 2,801 by rmoretti
Mon, 2021-03-29 06:53
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38 		1
 4,120 by msellers
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15 		1
 2,510 by Sergey
Mon, 2014-04-21 06:47
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21 		1
 2,117 by walcob
Mon, 2018-01-29 11:22
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25 		1
 2,728 by rmoretti
Wed, 2015-08-12 10:29
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16 		1
 3,369 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34 		1
 5,669 by rmoretti
Thu, 2014-09-04 11:36
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33 		1
 2,829 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12 		1
 2,173 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24 		1
 2,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52 		1
 3,304 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45 		1
 2,407 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45 		1
 2,377 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17 		1
 3,582 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22 		1
 2,644 by Labonte
Mon, 2014-09-08 09:13
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02 		1
 2,493 by smlewis
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40 		1
 2,629 by smlewis
Mon, 2014-04-21 06:47
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15 		1
 2,810 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40 		1
 3,974 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04 		1
 4,692 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14 		1
 2,842 by rmoretti
Wed, 2015-12-16 11:25
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30 		1
 7,352 by weitzner
Mon, 2014-04-21 06:47
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30 		1
 2,244 by matteoferla
Sun, 2022-03-20 02:53
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25 		1
 2,651 by smlewis
Mon, 2014-04-21 06:48
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06 		1
 1,650 by matteoferla
Wed, 2020-07-01 05:30
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00 		1
 3,367 by smlewis
Mon, 2014-04-21 06:47
Normal topic Challenge with applying AntibodyCDRGrafter method and MinMover method
by kylevaccaro » Sat, 2023-02-18 21:41 		1
 1,526 by nannemdp
Sun, 2023-02-19 12:05
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34 		1
 3,369 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56 		1
 2,984 by rmoretti
Mon, 2017-09-04 09:52
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 		1
 1,836 by matteoferla
Tue, 2021-01-05 03:53
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07 		1
 2,344 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02 		1
 2,425 by smlewis
Mon, 2014-04-21 06:47
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40 		1
 3,030 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06 		1
 1,978 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41 		1
 131 by rmoretti
Thu, 2024-06-20 11:34
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25 		1
 2,753 by Sergey
Mon, 2014-04-21 06:47
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19 		1
 1,870 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32 		1
 1,925 by rmoretti
Sat, 2017-12-16 10:47
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26 		1
 3,732 by rfschleif
Mon, 2014-04-21 06:47

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