You are here
PyRosetta - General
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
1 |
1,648 |
by matteoferla Wed, 2021-06-30 09:02 |
|
|
No pdb output file when running ab initio modeling by bunyaviridae » Thu, 2013-06-20 01:33 |
1 |
2,829 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
how do I compile the python bindings for rosetta3 for python2.5 linux x86_64 by tru » Wed, 2009-11-25 11:38 |
1 |
2,404 |
by luki Mon, 2014-04-21 06:47 |
|
|
Parsing XML tags using pyrosetta by rbehan » Mon, 2015-10-19 06:37 |
1 |
3,062 |
by rmoretti Mon, 2015-10-19 08:25 |
|
|
Adding energies of residues doesnt add up to energy of the entire protein by astrofunk » Tue, 2010-09-14 11:24 |
1 |
3,246 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
D070_Refinement.py by thorx020 » Fri, 2012-09-14 06:40 |
1 |
2,629 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
1 |
2,650 |
by rmoretti Mon, 2022-06-06 12:35 |
|
|
Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined" by jai_INMAS » Sun, 2013-10-20 05:22 |
1 |
2,644 |
by Labonte Mon, 2014-09-08 09:13 |
|
|
[Solved]NameError by nunesjulioc » Fri, 2010-02-05 08:26 |
1 |
2,418 |
by AlexI Mon, 2014-04-21 06:47 |
|
|
RNA docking by eschulz » Tue, 2012-02-28 03:04 |
1 |
4,692 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
1 |
2,308 |
by rmoretti Thu, 2019-05-09 15:56 |
|
|
Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
1 |
2,660 |
by rmoretti Mon, 2019-06-24 12:54 |
|
|
task_pack.restrict_to_repacking() not working by lanselibai » Mon, 2014-08-11 08:06 |
1 |
2,271 |
by rmoretti Tue, 2014-08-12 08:35 |
|
|
generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
2,537 |
by rmoretti Tue, 2018-01-30 06:29 |
|
|
Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
||||
|
how to add water into protein interface using solvated rotamers? by chinhsutran » Sun, 2013-07-21 20:25 |
1 |
2,651 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0) by embl-structures » Thu, 2010-08-05 05:02 |
1 |
21,605 |
by embl-structures Mon, 2014-04-21 06:47 |
|
|
Windows native build of PyRosetta 2.011 is ready for download! by Sergey » Mon, 2011-11-21 18:25 |
1 |
2,753 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Viewing and modifying hydrogen bond detection criteria by promero » Tue, 2014-09-16 15:26 |
1 |
3,233 |
by rmoretti Wed, 2014-09-17 07:29 |
|
|
Packing Fraction of atoms in a closed loop or turn by bharat_46010 » Fri, 2013-08-09 17:40 |
1 |
3,030 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
1 |
2,012 |
by matteoferla Tue, 2021-01-05 04:05 |
|
|
Fundamental methods: pose.residue().total_atom(), pose.atom(#) ? by msellers » Mon, 2010-11-01 10:53 |
1 |
2,722 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
1 |
2,213 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
Ligand dihedral moves by lah435 » Tue, 2015-03-03 11:56 |
1 |
2,471 |
by rmoretti Fri, 2015-04-24 13:17 |
|
|
How can i introduce hydrogen bond as constraint? by sp1020 » Mon, 2012-04-02 05:12 |
1 |
3,118 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta Docking server by hourosetta » Fri, 2011-02-11 08:36 |
1 |
3,465 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
any examples of calling SnugDock from pyrosetta? by antonkulaga » Thu, 2021-12-23 16:13 |
1 |
1,301 |
by matteoferla Mon, 2022-01-10 07:14 |
|
|
GDT_TS how can I get it with pyrosetta? by oppopomoz » Thu, 2014-01-09 02:51 |
1 |
2,805 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Folding Video by ac.research » Sat, 2018-05-12 09:19 |
1 |
2,113 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
Specifying disulfide bonds by msellers » Thu, 2010-12-02 10:38 |
1 |
4,120 |
by msellers Mon, 2014-04-21 06:47 |
|
|
pose_from_pdb gives RuntimeError: unidentifiable C++ exception? by cossio » Thu, 2014-11-27 14:43 |
1 |
3,140 |
by cossio Fri, 2014-11-28 05:05 |
|
|
number of residues in a specific chain by felipet » Mon, 2015-03-09 09:30 |
1 |
3,061 |
by jadolfbr Mon, 2015-03-09 12:54 |
|
|
PyRosetta on a HPC by ac.research » Thu, 2019-03-14 02:00 |
1 |
2,035 |
by rmoretti Wed, 2019-07-10 10:17 |
|
|
Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
1 |
2,802 |
by rmoretti Mon, 2021-03-29 06:53 |
|
|
Fragments picker: -nohom option seems not to work by oppopomoz » Tue, 2013-05-14 06:31 |
1 |
2,790 |
by linucks Mon, 2014-04-21 06:47 |
|
|
how to realize a free bb design? PackMover=fixed bb! by ast » Wed, 2011-08-31 09:41 |
1 |
3,665 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
PyMOL did not work from a remote machine with PyRosetta by Jeremy1990 » Sat, 2015-08-08 21:25 |
1 |
2,728 |
by rmoretti Wed, 2015-08-12 10:29 |
|
|
"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
1 |
2,117 |
by walcob Mon, 2018-01-29 11:22 |
|
|
GPU computing and PyRosetta by oppopomoz » Thu, 2013-07-11 05:55 |
1 |
4,716 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Fragment File Reading problem by Nuria » Tue, 2012-06-12 13:42 |
1 |
2,568 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RuntimeError: unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:16 |
1 |
3,369 |
by rmoretti Tue, 2015-10-27 08:46 |
|
|
Missing residue coordinates in PDB files by lanselibai » Thu, 2014-09-04 07:34 |
1 |
5,669 |
by rmoretti Thu, 2014-09-04 11:36 |
|
|
Create PDB for heterodimer by pachecoj » Mon, 2013-08-05 19:11 |
1 |
5,913 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Amino acid modifications: retinal linked to lysine by tsikosek » Tue, 2014-01-21 12:52 |
1 |
3,304 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Boost.Python C++/PyRosetta interop by gipsonb » Wed, 2010-10-06 15:15 |
1 |
2,810 |
by gipsonb Mon, 2014-04-21 06:47 |
|
|
pose_from_rcsb error by criss.hartzell » Wed, 2020-04-22 15:12 |
1 |
2,175 |
by matteoferla Thu, 2020-04-30 12:04 |
|
|
Deleting residue one produces a segmentation fault by rfschleif » Thu, 2011-06-16 07:02 |
1 |
2,493 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
2,408 |
by zhangying1990 Fri, 2019-02-01 00:44 |
|
|
Replace the rotamer of a particular residue in a pose by AyushGoyal » Wed, 2014-04-02 23:45 |
1 |
2,377 |
by rmoretti Thu, 2014-04-03 07:27 |
|
|
Units of kT for MC mover by msellers » Fri, 2010-12-10 05:40 |
1 |
3,974 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Relax with constraints in PyRosetta by ac.research » Tue, 2017-11-21 10:17 |
1 |
3,582 |
by rmoretti Sat, 2017-12-09 01:50 |
|
|
PyRosetta 2.0 Beta Strand Build by Qulprit » Tue, 2011-02-08 11:30 |
1 |
7,352 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Help on Chimera Creator/Homodomain script by jadolfbr » Mon, 2010-06-14 21:34 |
1 |
3,369 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
installing PyRosetta on non-Intel-based Mac platform by sid » Tue, 2009-10-06 09:07 |
1 |
2,344 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
JobDistributor Bug by brettth » Fri, 2011-03-11 07:00 |
1 |
3,367 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
is_aromatic function by jadolfbr » Mon, 2013-12-02 19:31 |
2 |
3,082 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
How To Read PyRosetta Documentation - GenericMonteCarloMover as example by ac.research » Wed, 2017-07-05 09:08 |
2 |
3,125 |
by ac.research Thu, 2017-07-06 11:09 |
|
|
Weird message whenever I try to calculate energies by astrofunk » Fri, 2010-08-20 05:55 |
2 |
3,759 |
by astrofunk Mon, 2014-04-21 06:47 |
|
|
Problem with sending individual energy terms using PyMOL Mover by jadolfbr » Fri, 2011-12-23 10:54 |
2 |
3,208 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
[Solved] PyRosetta segmentation fault in Linux by AlexI » Wed, 2010-02-03 22:59 |
2 |
4,649 |
by AlexI Mon, 2014-04-21 06:47 |
|
|
Coordinates in pose do not match those in PDB by ajasja » Tue, 2014-10-28 12:29 |
2 |
3,685 |
by ajasja Thu, 2014-10-30 08:32 |
|
|
Alternative to MinMover by MNP1986 » Tue, 2018-07-31 02:18 |
2 |
3,320 |
by MNP1986 Tue, 2018-07-31 23:50 |
|
|
Nonstandard residue parameters fail by lah435 » Wed, 2014-08-06 17:53 |
2 |
3,946 |
by lah435 Mon, 2014-08-18 17:23 |
|
|
Less silly way to get number of iterations of Relax by matteoferla » Tue, 2021-07-20 07:00 |
2 |
1,885 |
by matteoferla Tue, 2021-07-20 13:44 |
|
|
Repeat study by thomashrabe » Tue, 2017-06-20 11:21 |
2 |
2,600 |
by parmef Sat, 2017-06-24 03:18 |
|
|
Questions of Cartesian_ddG calculation in PyRosetta by CKS2001 » Fri, 2022-01-07 01:36 |
2 |
2,199 |
by CKS2001 Sat, 2022-01-08 02:14 |
|
|
loop modeling error 'CcdLoopClosureMover' object is not callable by jai_INMAS » Tue, 2013-10-22 01:49 |
2 |
3,580 |
by jai_INMAS Mon, 2014-04-21 06:48 |
|
|
read parameters of metal ions by Stefan » Tue, 2011-07-19 08:38 |
2 |
4,293 |
by Stefan Mon, 2014-04-21 06:47 |
|
|
Where can I found the dictory of all function of Pyrosetta？ by sprinkle166 » Mon, 2017-10-16 13:58 |
2 |
2,712 |
by sprinkle166 Wed, 2017-10-18 09:06 |
|
|
Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
2 |
2,590 |
by Peik Fri, 2021-02-19 10:30 |
|
|
Problems when inserting spin-label R1A by ajasja » Fri, 2014-06-27 04:14 |
2 |
3,549 |
by ajasja Thu, 2014-07-03 05:36 |
|
|
Cutout part of a protein by ac.research » Wed, 2017-05-31 11:55 |
2 |
2,933 |
by jadolfbr Sat, 2017-06-03 19:20 |
|
|
installing PyRosetta on Mac OSX 10.6 and Linux in VMWare by sid » Tue, 2009-10-06 09:04 |
2 |
4,358 |
by reve_etrange Mon, 2014-04-21 06:47 |
|
|
libmini.dylib by evo_umich » Fri, 2011-09-23 14:08 |
2 |
3,658 |
by evo_umich Mon, 2014-04-21 06:47 |
|
|
How to pop off terminus variants by xfliu » Mon, 2012-09-03 03:12 |
2 |
3,336 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
Forum webpage not working by ajasja » Mon, 2014-09-22 06:14 |
2 |
2,993 |
by ajasja Mon, 2014-09-22 09:53 |
|
|
Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
2 |
2,070 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
|
|
Constraint files, section formatted by srballard » Fri, 2010-11-05 11:55 |
2 |
3,048 |
by drluca77 Mon, 2014-04-21 06:47 |
|
|
How does one convert a PDB file of an antibody to AHO scheme? by kylevaccaro » Mon, 2023-02-13 18:14 |
2 |
1,692 |
by kylevaccaro Wed, 2023-02-15 19:18 |
|
|
why two packing setting return different energy? by zhangying1990 » Wed, 2019-01-30 00:18 |
2 |
2,744 |
by zhangying1990 Fri, 2019-02-01 00:30 |
|
|
PyRosetta coding subtleties by lah435 » Wed, 2013-03-27 02:59 |
2 |
4,514 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Complex DNA Protein docking by kim-nguyen » Wed, 2015-07-22 13:49 |
2 |
4,221 |
by kim-nguyen Fri, 2015-07-24 23:04 |
|
|
EnergyMethodCreator error when writing custom energy method by furybubu » Mon, 2017-12-11 15:46 |
2 |
2,814 |
by furybubu Tue, 2017-12-12 10:04 |
|
|
Error in core/scoring/methods/VDW_Energy.cc line: 169 by pepfolder » Thu, 2012-05-31 11:13 |
2 |
4,632 |
by pepfolder Mon, 2014-04-21 06:47 |
|
|
Reading constraints from a file by lah435 » Wed, 2017-06-14 18:56 |
2 |
3,086 |
by rmoretti Fri, 2017-06-16 07:22 |
|
|
Classic Relax by iGemBoulder » Fri, 2019-06-28 09:24 |
2 |
2,811 |
by sheehajh Wed, 2019-07-17 12:43 |
|
|
Can I export command line & result from iPython PyRosetta shell to a text file? by lanselibai » Mon, 2014-08-25 04:05 |
2 |
3,889 |
by lanselibai Tue, 2014-08-26 01:49 |
|
|
Sample dihedral database by tiagogomes89 » Mon, 2018-03-12 04:28 |
2 |
2,452 |
by tiagogomes89 Mon, 2018-03-12 10:01 |
|
|
RosettaDesign Result Evaluation by ac.research » Tue, 2018-06-05 18:45 |
2 |
2,969 |
by ac.research Wed, 2018-07-18 03:50 |
|
|
Interface Design by brettth » Wed, 2010-12-08 07:25 |
2 |
5,296 |
by SunH Mon, 2014-04-21 06:47 |
|
|
Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
2 |
3,021 |
by matteoferla Fri, 2020-07-10 02:20 |
|
|
Different results FastRelax pyrosetta vs rosetta_scripts by karenjgonzalez » Tue, 2023-06-20 09:52 |
2 |
885 |
by karenjgonzalez Fri, 2023-08-11 10:57 |
|
|
Are there any plans to make PyRosetta directly functional on 64-bit architecture? by AndrewBworth » Fri, 2009-12-18 10:09 |
2 |
2,975 |
by sid Mon, 2014-04-21 06:47 |
|
|
eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
2 |
3,101 |
by TensorDuck Mon, 2018-04-02 13:41 |
|
|
Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
2 |
1,596 |
by João Sartori Wed, 2022-02-09 04:35 |
|
|
Define custom potential? by rfschleif » Fri, 2011-05-06 11:25 |
2 |
3,921 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Failure appending a residue by rfschleif » Thu, 2011-06-16 10:53 |
2 |
3,974 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PyRosetta Global Docking by ac.research » Sat, 2017-08-26 03:31 |
2 |
3,231 |
by Sergey Thu, 2017-08-31 04:39 |
|
|
Python 2.6 by AndrewBworth » Mon, 2010-02-01 18:49 |
2 |
3,293 |
by AlexI Mon, 2014-04-21 06:47 |
|
|
Cannot get PyMOL_mover to work on MacOS by cno » Fri, 2012-02-10 07:24 |
2 |
4,548 |
by cno Mon, 2014-04-21 06:47 |
|