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PyRosetta - General

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Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21 		4
 4,602 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20 		0
 1,149 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49 		2
 3,294 by AlexI
Mon, 2014-04-21 06:47
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00 		1
 2,660 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51 		0
 1,810 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02 		0
 1,654 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45 		6
 8,350 by Sergey
Wed, 2015-03-18 11:22
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33 		1
 1,460 by matteoferla
Sat, 2021-04-10 07:18
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50 		0
 2,122 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00 		1
 2,037 by rmoretti
Wed, 2019-07-10 10:17
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36 		3
 4,222 by LiorZ
Fri, 2016-06-17 08:20
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20 		1
 2,639 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38 		0
 1,314 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31 		2
 3,232 by Sergey
Thu, 2017-08-31 04:39
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23 		9
 10,740 by ac.research
Wed, 2017-07-05 16:59
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20 		6
 8,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05 		2
 1,766 by Eden
Mon, 2021-06-14 23:10
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59 		2
 4,515 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09 		7
 12,581 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30 		1
 7,353 by weitzner
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24 		3
 4,417 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06 		0
 1,622 by sylvia
Mon, 2014-04-21 06:47
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44 		3
 4,768 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15 		4
 7,489 by MarkW
Mon, 2015-08-24 04:43
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38 		4
 5,154 by cossio
Wed, 2015-04-15 12:31
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51 		0
 1,317 by nleroy
Mon, 2019-07-22 07:51
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07 		6
 5,407 by Sergey
Tue, 2018-05-15 11:20
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25 		1
 2,729 by rmoretti
Wed, 2015-08-12 10:29
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56 		1
 2,985 by rmoretti
Mon, 2017-09-04 09:52
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14 		1
 1,819 by matteoferla
Tue, 2021-03-30 08:20
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14 		2
 2,118 by vmulligan
Mon, 2021-03-29 10:39
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05 		1
 2,687 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32 		4
 7,307 by shivarawat115
Mon, 2022-04-11 16:03
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20 		3
 4,635 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51 		9
 9,043 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26 		0
 1,956 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14 		2
 3,550 by ajasja
Thu, 2014-07-03 05:36
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54 		2
 3,209 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem importing AlphaFold PDB
by Rick Neubig » Mon, 2023-01-09 09:48 		4
 2,628 by Rick Neubig
Tue, 2023-01-10 04:11
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15 		5
 5,238 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04 		3
 3,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic Post-traslational modifications
by diegoms » Wed, 2023-06-21 01:22 		4
 1,392 by diegoms
Wed, 2023-08-02 01:18
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59 		4
 5,380 by nawsad
Sun, 2014-07-13 00:49
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12 		1
 2,176 by matteoferla
Thu, 2020-04-30 12:04
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43 		1
 3,141 by cossio
Fri, 2014-11-28 05:05
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51 		3
 4,208 by rmoretti
Wed, 2015-10-07 16:35
Normal topic Pose is full atom and mover expects centroid, how do I handle it the best?
by hlinn » Thu, 2022-01-27 05:55 		4
 2,495 by hlinn
Tue, 2022-02-08 07:23
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35 		3
 4,980 by smlewis
Mon, 2014-04-21 06:47
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33 		1
 1,815 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37 		1
 3,063 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12 		6
 12,033 by msellers
Mon, 2014-04-21 06:47
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40 		1
 3,031 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12 		1
 2,343 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23 		5
 6,264 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35 		6
 6,034 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30 		1
 3,062 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49 		3
 3,362 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53 		2
 3,947 by lah435
Mon, 2014-08-18 17:23
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13 		0
 1,894 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51 		12
 13,834 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33 		1
 2,830 by rmoretti
Mon, 2014-04-21 06:48
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50 		10
 9,400 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50 		2
 4,190 by ajasja
Fri, 2014-08-22 08:32
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00 		5
 5,557 by MNP1986
Mon, 2018-12-03 04:02
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36 		0
 1,667 by Victor
Mon, 2014-04-21 06:47
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24 		1
 2,768 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02 		1
 2,137 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49 		3
 4,548 by Sergey
Wed, 2015-08-19 15:47
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13 		6
 7,189 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32 		6
 7,879 by rmoretti
Fri, 2016-04-29 09:48
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55 		7
 8,980 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30 		2
 2,664 by tfobe
Mon, 2019-05-20 16:05
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02 		1
 2,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25 		1
 2,310 by rmoretti
Thu, 2019-05-09 15:56
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24 		29
 29,314 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54 		1
 1,425 by tsztain
Sun, 2021-08-29 11:15
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53 		2
 2,602 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46 		3
 3,841 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34 		1
 5,670 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45 		2
 3,841 by lah435
Mon, 2014-04-21 06:47
Normal topic Minimizing a Symmetric Structure
by ammar.x.gilani » Wed, 2023-08-02 11:10 		0
 393 by ammar.x.gilani
Wed, 2023-08-02 11:10
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59 		14
 13,868 by Sergey
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32 		1
 1,926 by rmoretti
Sat, 2017-12-16 10:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21 		1
 2,460 by smlewis
Mon, 2014-04-21 06:47
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24 		15
 22,117 by ajasja
Mon, 2014-09-22 10:17
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15 		1
 2,632 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49 		2
 3,581 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic London
by MarkW » Sun, 2015-02-08 14:14 		0
 2,088 by MarkW
Sun, 2015-02-08 14:14
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56 		1
 2,472 by rmoretti
Fri, 2015-04-24 13:17
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08 		2
 3,659 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48 		1
 2,133 by Sergey
Tue, 2017-01-31 13:42
Normal topic Less silly way to get number of iterations of Relax
by matteoferla » Tue, 2021-07-20 07:00 		2
 1,887 by matteoferla
Tue, 2021-07-20 13:44
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09 		4
 7,567 by ajasja
Mon, 2014-09-22 09:51
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00 		1
 2,922 by smlewis
Mon, 2014-04-21 06:47
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00 		1
 3,367 by smlewis
Mon, 2014-04-21 06:47
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21 		3
 4,754 by rmoretti
Mon, 2014-09-29 00:06
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31 		2
 3,083 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59 		2
 2,855 by Ken
Fri, 2022-05-06 07:03
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25 		2
 5,297 by SunH
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06 		1
 1,652 by matteoferla
Wed, 2020-07-01 05:30