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PyRosetta - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07 		2
 3,546 by Sergey
Mon, 2014-04-21 06:48
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25 		2
 5,673 by rmoretti
Fri, 2016-06-17 09:25
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57 		2
 2,860 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38 		2
 2,489 by matteoferla
Fri, 2020-11-20 07:47
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04 		2
 5,703 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53 		2
 2,600 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59 		2
 2,853 by Ken
Fri, 2022-05-06 07:03
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25 		2
 3,566 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18 		2
 4,129 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31 		2
 4,120 by smlewis
Mon, 2014-04-21 06:47
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30 		2
 4,096 by ajasja
Sat, 2014-06-21 11:57
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24 		2
 4,431 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55 		2
 3,325 by ac.research
Fri, 2017-06-30 05:44
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16 		2
 3,453 by yijietseng
Wed, 2019-05-22 09:54
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05 		2
 2,265 by patcD
Wed, 2021-09-01 03:30
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43 		2
 2,445 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19 		2
 2,031 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45 		2
 3,840 by lah435
Mon, 2014-04-21 06:47
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10 		2
 4,703 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35 		2
 3,397 by protos_heis
Fri, 2015-02-27 13:38
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10 		2
 2,918 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44 		2
 1,797 by sdtruong
Mon, 2021-03-22 17:05
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00 		2
 4,201 by msellers
Mon, 2014-04-21 06:47
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22 		2
 2,492 by matteoferla
Fri, 2020-10-09 05:20
Normal topic FastRelax results in bad structure
by Eden » Mon, 2021-04-26 08:39 		2
 2,003 by Eden
Wed, 2021-06-23 01:13
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59 		2
 2,510 by yijietseng
Fri, 2019-05-31 12:21
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31 		2
 3,082 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08 		2
 3,126 by ac.research
Thu, 2017-07-06 11:09
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55 		2
 3,759 by astrofunk
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54 		2
 3,208 by Sergey
Mon, 2014-04-21 06:47
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29 		2
 3,686 by ajasja
Thu, 2014-10-30 08:32
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18 		2
 3,321 by MNP1986
Tue, 2018-07-31 23:50
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59 		2
 4,649 by AlexI
Mon, 2014-04-21 06:47
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21 		2
 2,601 by parmef
Sat, 2017-06-24 03:18
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53 		2
 3,946 by lah435
Mon, 2014-08-18 17:23
Normal topic Less silly way to get number of iterations of Relax
by matteoferla » Tue, 2021-07-20 07:00 		2
 1,885 by matteoferla
Tue, 2021-07-20 13:44
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57 		3
 5,121 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11 		3
 4,987 by rmoretti
Tue, 2014-09-23 08:36
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53 		3
 3,182 by rmoretti
Thu, 2020-07-09 08:35
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29 		3
 5,270 by Sergey
Fri, 2015-03-27 14:34
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35 		3
 4,979 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to create an ObjexxFCL FArray?
by matteoferla » Tue, 2020-08-18 03:22 		3
 2,447 by matteoferla
Thu, 2021-07-08 06:02
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41 		3
 4,774 by galvaner
Mon, 2015-09-21 13:37
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20 		3
 4,634 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17 		3
 4,410 by rmoretti
Tue, 2015-12-01 15:18
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34 		3
 5,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30 		3
 5,506 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40 		3
 4,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25 		3
 4,221 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15 		3
 3,773 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53 		3
 4,865 by matteoferla
Thu, 2021-04-29 06:30
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12 		3
 4,255 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49 		3
 3,356 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01 		3
 4,678 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36 		3
 4,222 by LiorZ
Fri, 2016-06-17 08:20
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18 		3
 4,925 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37 		3
 6,075 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18 		3
 5,218 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46 		3
 3,841 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42 		3
 4,062 by Sergey
Mon, 2014-04-21 06:48
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39 		3
 2,889 by Peik
Thu, 2020-08-06 11:50
Normal topic How to fold membrane protein in PyRosetta?
by assignfit » Fri, 2011-02-25 21:39 		3
 4,373 by assignfit
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44 		3
 5,657 by smlewis
Mon, 2014-04-21 06:47
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49 		3
 4,548 by Sergey
Wed, 2015-08-19 15:47
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25 		3
 5,114 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19 		3
 4,423 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57 		3
 4,593 by msellers
Mon, 2014-04-21 06:47
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33 		3
 4,064 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24 		3
 4,069 by matteoferla
Sat, 2020-07-25 03:52
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16 		3
 3,435 by rmoretti
Sat, 2017-12-16 14:06
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28 		3
 3,574 by lah435
Fri, 2017-06-16 12:24
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44 		3
 4,767 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24 		3
 4,416 by smlewis
Mon, 2014-04-21 06:47
Normal topic [Solved] Docking in metalloprotease (Zinc problem)
by zgcarvalho » Wed, 2010-01-20 16:04 		3
 5,295 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52 		3
 4,828 by Victor
Mon, 2014-04-21 06:47
Normal topic Rotamers one- and two-body energies
by ajfmdm » Thu, 2024-04-04 00:48 		3
 561 by ajfmdm
Wed, 2024-05-29 05:39
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02 		3
 2,752 by vmulligan
Tue, 2020-10-06 15:13
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15 		3
 6,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41 		3
 4,387 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23 		3
 3,943 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42 		3
 3,732 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46 		3
 4,373 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51 		3
 4,208 by rmoretti
Wed, 2015-10-07 16:35
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20 		3
 4,904 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59 		3
 4,351 by weitzner
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38 		3
 6,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34 		3
 3,159 by smlewis
Tue, 2019-07-23 13:27
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21 		3
 4,754 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Using OStream objects in PyRosetta
by ggyimesi » Mon, 2014-02-10 03:10 		3
 4,717 by ggyimesi
Mon, 2014-02-17 09:52
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04 		3
 3,764 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49 		3
 2,576 by matteoferla
Fri, 2021-05-28 02:41
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01 		3
 4,768 by StevPChem
Thu, 2015-08-06 11:07
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30 		3
 4,129 by juden99
Mon, 2014-04-21 06:47
Normal topic Post-traslational modifications
by diegoms » Wed, 2023-06-21 01:22 		4
 1,388 by diegoms
Wed, 2023-08-02 01:18
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01 		4
 7,287 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50 		4
 5,456 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11 		4
 4,853 by Victor
Mon, 2014-04-21 06:48
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47 		4
 4,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21 		4
 4,601 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02 		4
 4,880 by dsim
Mon, 2014-09-15 07:47