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PyRosetta - General

Topic / Topic starter Repliessort ascending Views Last post
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28 		2
 2,455 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45 		2
 2,972 by ac.research
Wed, 2018-07-18 03:50
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25 		2
 5,297 by SunH
Mon, 2014-04-21 06:47
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14 		2
 3,023 by matteoferla
Fri, 2020-07-10 02:20
Normal topic Different results FastRelax pyrosetta vs rosetta_scripts
by karenjgonzalez » Tue, 2023-06-20 09:52 		2
 887 by karenjgonzalez
Fri, 2023-08-11 10:57
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09 		2
 2,976 by sid
Mon, 2014-04-21 06:47
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05 		2
 3,104 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic Acessing energies terms from energy.show() table
by João Sartori » Mon, 2022-02-07 07:56 		2
 1,598 by João Sartori
Wed, 2022-02-09 04:35
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25 		2
 3,922 by weitzner
Mon, 2014-04-21 06:47
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31 		2
 3,234 by Sergey
Thu, 2017-08-31 04:39
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49 		2
 3,294 by AlexI
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24 		2
 4,549 by cno
Mon, 2014-04-21 06:47
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50 		2
 2,990 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Applying RMSD constraints using pyrosetta or Rosettascripts
by chenna » Thu, 2023-02-09 05:37 		2
 1,850 by chenna
Fri, 2023-02-10 05:37
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53 		2
 3,975 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58 		2
 3,200 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53 		2
 2,904 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14 		2
 2,118 by vmulligan
Mon, 2021-03-29 10:39
Normal topic [Solved] Segmentation fault
by zgcarvalho » Thu, 2010-02-11 06:30 		2
 4,963 by zgcarvalho
Mon, 2014-04-21 06:47
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00 		2
 3,480 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30 		2
 2,664 by tfobe
Mon, 2019-05-20 16:05
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50 		2
 4,190 by ajasja
Fri, 2014-08-22 08:32
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05 		2
 1,766 by Eden
Mon, 2021-06-14 23:10
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25 		2
 5,675 by rmoretti
Fri, 2016-06-17 09:25
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57 		2
 2,864 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07 		2
 3,547 by Sergey
Mon, 2014-04-21 06:48
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04 		2
 5,704 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53 		2
 2,602 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59 		2
 2,855 by Ken
Fri, 2022-05-06 07:03
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38 		2
 2,491 by matteoferla
Fri, 2020-11-20 07:47
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18 		2
 4,130 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31 		2
 4,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25 		2
 3,568 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30 		2
 4,097 by ajasja
Sat, 2014-06-21 11:57
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24 		2
 4,433 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16 		2
 3,457 by yijietseng
Wed, 2019-05-22 09:54
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05 		2
 2,267 by patcD
Wed, 2021-09-01 03:30
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55 		2
 3,327 by ac.research
Fri, 2017-06-30 05:44
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43 		2
 2,449 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19 		2
 2,033 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45 		2
 3,841 by lah435
Mon, 2014-04-21 06:47
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10 		2
 4,705 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00 		2
 4,202 by msellers
Mon, 2014-04-21 06:47
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10 		2
 2,920 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44 		2
 1,799 by sdtruong
Mon, 2021-03-22 17:05
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22 		2
 2,494 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35 		2
 3,399 by protos_heis
Fri, 2015-02-27 13:38
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17 		1
 3,584 by rmoretti
Sat, 2017-12-09 01:50
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30 		1
 7,353 by weitzner
Mon, 2014-04-21 06:47
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07 		1
 2,345 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00 		1
 3,367 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34 		1
 3,370 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02 		1
 2,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14 		1
 2,845 by rmoretti
Wed, 2015-12-16 11:25
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30 		1
 2,246 by matteoferla
Sun, 2022-03-20 02:53
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06 		1
 2,391 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56 		1
 2,986 by rmoretti
Mon, 2017-09-04 09:52
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 		1
 1,838 by matteoferla
Tue, 2021-01-05 03:53
Normal topic fragment for polyAAA
by knutjbj » Mon, 2010-11-29 08:23 		1
 2,555 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06 		1
 1,652 by matteoferla
Wed, 2020-07-01 05:30
Normal topic Challenge with applying AntibodyCDRGrafter method and MinMover method
by kylevaccaro » Sat, 2023-02-18 21:41 		1
 1,528 by nannemdp
Sun, 2023-02-19 12:05
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26 		1
 3,732 by rfschleif
Mon, 2014-04-21 06:47
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25 		1
 2,372 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19 		1
 1,872 by rmoretti
Fri, 2017-12-01 10:25
Normal topic [Solved] Docking to a trimer
by batch2k » Wed, 2010-02-17 02:18 		1
 2,305 by batch2k
Mon, 2014-04-21 06:47
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06 		1
 1,981 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41 		1
 133 by rmoretti
Thu, 2024-06-20 11:34
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05 		1
 2,687 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02 		1
 2,137 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32 		1
 1,927 by rmoretti
Sat, 2017-12-16 10:47
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15 		1
 2,632 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20 		1
 2,639 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28 		1
 2,933 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28 		1
 1,822 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12 		1
 2,344 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32 		1
 1,775 by smlewis
Tue, 2020-09-29 12:00
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16 		1
 1,508 by matteoferla
Wed, 2020-12-02 13:49
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55 		1
 2,304 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54 		1
 2,426 by sid
Mon, 2014-04-21 06:47
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28 		1
 2,287 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04 		1
 2,201 by rmoretti
Sat, 2018-06-30 02:37
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51 		1
 3,359 by rmoretti
Thu, 2022-07-21 07:14
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00 		1
 2,922 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21 		1
 2,460 by smlewis
Mon, 2014-04-21 06:47
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51 		1
 2,180 by Labonte
Thu, 2016-10-06 14:05
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32 		1
 2,107 by ralford
Wed, 2018-12-19 03:20
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33 		1
 1,816 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33 		1
 1,460 by matteoferla
Sat, 2021-04-10 07:18
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26 		1
 2,550 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26 		1
 2,779 by Sergey
Thu, 2014-08-14 11:54
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54 		1
 1,425 by tsztain
Sun, 2021-08-29 11:15
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00 		1
 2,660 by Sergey
Mon, 2014-04-21 06:47
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44 		1
 2,756 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Falling at the first hurdle
by pardave » Tue, 2010-01-05 00:53 		1
 2,519 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48 		1
 1,312 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15 		1
 2,511 by Sergey
Mon, 2014-04-21 06:47
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16 		1
 2,311 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35 		1
 2,062 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14 		1
 1,819 by matteoferla
Tue, 2021-03-30 08:20
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11 		1
 3,872 by Sergey
Mon, 2014-04-21 06:47