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PyRosetta - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20 		0
 1,149 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21 		4
 4,602 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09 		7
 7,609 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54 		1
 2,660 by rmoretti
Mon, 2019-06-24 12:54
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54 		0
 1,732 by jurkm
Mon, 2014-04-21 06:47
Normal topic Questions of Cartesian_ddG calculation in PyRosetta
by CKS2001 » Fri, 2022-01-07 01:36 		2
 2,199 by CKS2001
Sat, 2022-01-08 02:14
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01 		3
 4,679 by rmoretti
Mon, 2014-04-21 06:48
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38 		2
 4,293 by Stefan
Mon, 2014-04-21 06:47
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56 		2
 3,087 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25 		2
 3,566 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51 		4
 6,061 by Sergey
Fri, 2015-04-10 11:25
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41 		3
 4,388 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16 		2
 3,453 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17 		1
 3,583 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46 		8
 8,707 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55 		1
 2,214 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21 		2
 2,601 by parmef
Sat, 2017-06-24 03:18
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45 		1
 2,377 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25 		3
 5,114 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57 		2
 2,860 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16 		0
 1,863 by sharang
Mon, 2014-04-21 06:47
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19 		5
 7,406 by rmoretti
Mon, 2014-10-06 14:37
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05 		2
 2,265 by patcD
Wed, 2021-09-01 03:30
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14 		1
 2,843 by rmoretti
Wed, 2015-12-16 11:25
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52 		3
 4,829 by Victor
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04 		1
 4,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36 		1
 3,465 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18 		3
 4,925 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38 		3
 6,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29 		0
 1,386 by tschiex
Sun, 2017-11-05 08:29
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45 		2
 2,970 by ac.research
Wed, 2018-07-18 03:50
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28 		5
 5,259 by rmoretti
Thu, 2017-07-06 12:49
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53 		3
 4,865 by matteoferla
Thu, 2021-04-29 06:30
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18 		3
 5,218 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37 		7
 9,515 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02 		8
 11,158 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Rotamers one- and two-body energies
by ajfmdm » Thu, 2024-04-04 00:48 		3
 561 by ajfmdm
Wed, 2024-05-29 05:39
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16 		1
 3,370 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28 		2
 2,453 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55 		2
 3,325 by ac.research
Fri, 2017-06-30 05:44
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28 		1
 1,820 by rmoretti
Tue, 2019-07-09 09:42
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59 		24
 39,310 by msun
Fri, 2015-07-10 11:03
Normal topic Score Function with Constraints
by ac.research » Fri, 2017-07-28 06:41 		6
 7,828 by ac.research
Sat, 2017-12-09 02:15
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29 		5
 6,535 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31 		2
 4,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06 		1
 2,391 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30 		0
 2,218 by xfliu
Mon, 2014-04-21 06:47
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25 		1
 2,372 by rmoretti
Mon, 2014-04-21 06:48
Normal topic segfault in loop
by reve_etrange » Sat, 2010-02-13 21:49 		1
 2,319 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00 		0
 1,097 by mm
Wed, 2020-07-22 03:02
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41 		1
 132 by rmoretti
Thu, 2024-06-20 11:34
Normal topic Segmentation fault when reading VMD PDB
by msellers » Mon, 2011-01-03 07:14 		6
 9,488 by smlewis
Mon, 2014-04-21 06:47
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06 		10
 11,012 by ggyimesi
Mon, 2014-04-21 06:47
Hot topic SequenceRelax on a loop
by jtmacd » Mon, 2011-04-11 07:53 		15
 14,235 by ñ
Mon, 2014-04-21 06:47
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42 		3
 3,732 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Set torsions for atoms in different residues
by mluengo » Fri, 2023-05-12 03:07 		0
 443 by mluengo
Fri, 2023-05-12 03:07
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43 		2
 2,445 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23 		3
 3,944 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57 		0
 1,922 by sharang
Mon, 2014-04-21 06:47
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38 		1
 4,120 by msellers
Mon, 2014-04-21 06:47
Normal topic Strange fold tree problem with classic and fast relax
by jadolfbr » Mon, 2011-03-21 11:58 		4
 5,451 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34 		0
 1,204 by publicclass
Thu, 2020-11-05 09:34
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02 		0
 1,743 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50 		9
 9,019 by dsim
Tue, 2016-11-22 08:11
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42 		3
 4,063 by Sergey
Mon, 2014-04-21 06:48
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39 		0
 894 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06 		1
 2,272 by rmoretti
Tue, 2014-08-12 08:35
Normal topic The Beta version of PyRosetta 2.0 is ready for download!
by Sergey » Mon, 2011-01-24 10:12 		9
 8,798 by drluca77
Mon, 2014-04-21 06:47
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44 		0
 1,504 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07 		2
 3,547 by Sergey
Mon, 2014-04-21 06:48
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02 		1
 21,605 by embl-structures
Mon, 2014-04-21 06:47
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40 		1
 3,974 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21 		6
 6,368 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33 		0
 2,013 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30 		3
 4,129 by juden99
Mon, 2014-04-21 06:47
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28 		1
 2,932 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53 		2
 2,902 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Using OStream objects in PyRosetta
by ggyimesi » Mon, 2014-02-10 03:10 		3
 4,717 by ggyimesi
Mon, 2014-02-17 09:52
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57 		3
 4,593 by msellers
Mon, 2014-04-21 06:47
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35 		5
 3,652 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24 		2
 4,431 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26 		1
 3,234 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55 		2
 3,759 by astrofunk
Mon, 2014-04-21 06:47
Normal topic What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)?
by lanselibai » Sat, 2023-10-28 09:49 		1
 636 by rmoretti
Mon, 2023-10-30 08:43
Normal topic Where can I found the dictory of all function of Pyrosetta？
by sprinkle166 » Mon, 2017-10-16 13:58 		2
 2,713 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10 		2
 2,918 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21 		4
 6,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18 		2
 2,744 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35 		2
 3,397 by protos_heis
Fri, 2015-02-27 13:38
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25 		1
 2,754 by Sergey
Mon, 2014-04-21 06:47
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58 		0
 1,887 by Sergey
Mon, 2014-04-21 06:47
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02 		0
 1,135 by jetu20
Sun, 2020-10-11 21:02
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33 		3
 4,064 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic [Solved] Docking in metalloprotease (Zinc problem)
by zgcarvalho » Wed, 2010-01-20 16:04 		3
 5,295 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic [Solved] Docking to a trimer
by batch2k » Wed, 2010-02-17 02:18 		1
 2,304 by batch2k
Mon, 2014-04-21 06:47
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59 		2
 4,649 by AlexI
Mon, 2014-04-21 06:47
Normal topic [Solved] Segmentation fault
by zgcarvalho » Thu, 2010-02-11 06:30 		2
 4,962 by zgcarvalho
Mon, 2014-04-21 06:47
Normal topic [Solved]NameError
by nunesjulioc » Fri, 2010-02-05 08:26 		1
 2,418 by AlexI
Mon, 2014-04-21 06:47
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26 		1
 2,548 by rmoretti
Mon, 2019-06-24 12:47
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44 		13
 14,889 by matteoferla
Wed, 2022-01-12 01:20