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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52 		1
 2,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50 		1
 4,151 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17 		6
 7,746 by jarod
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31 		14
 15,603 by Basantab
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55 		2
 3,396 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08 		4
 4,575 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21 		4
 5,117 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07 		11
 12,952 by jarod
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21 		5
 6,665 by brspurri
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23 		2
 4,154 by aloshbau
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51 		4
 5,249 by rmoretti
Mon, 2014-04-21 06:47
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00 		1
 2,926 by jarod
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09 		1
 3,388 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23 		1
 2,548 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39 		3
 4,900 by rmoretti
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01 		1
 2,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16 		4
 6,012 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48 		2
 3,039 by ronj
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56 		6
 6,806 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40 		3
 3,498 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51 		1
 2,555 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05 		2
 2,749 by nawsad
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45 		6
 8,229 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13 		4
 5,508 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11 		9
 9,245 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31 		8
 8,452 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46 		3
 4,348 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33 		4
 4,504 by smlewis
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07 		5
 5,076 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35 		3
 3,901 by weehee
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40 		15
 15,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57 		3
 5,170 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09 		10
 10,214 by deltag
Mon, 2014-04-21 06:47
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45 		24
 20,362 by aroop
Mon, 2014-04-21 06:47
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12 		11
 11,035 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35 		5
 9,370 by deltag
Mon, 2014-04-21 06:47
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35 		7
 7,345 by dktest
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03 		5
 7,252 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13 		9
 9,127 by petrikigor
Mon, 2014-04-21 06:47
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55 		12
 14,395 by benniu2004
Mon, 2014-04-21 06:47
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33 		1
 2,531 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55 		3
 4,098 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31 		2
 3,256 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56 		0
 1,836 by petrikigor
Mon, 2014-04-21 06:47
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04 		8
 8,976 by benniu2004
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45 		5
 6,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00 		4
 4,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42 		3
 3,690 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25 		4
 5,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45 		5
 4,920 by aroop
Mon, 2014-04-21 06:47
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07 		1
 2,484 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34 		18
 15,918 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02 		9
 7,408 by albumns
Mon, 2014-04-21 06:47
Hot topic homology modeling with end extension
by fred » Mon, 2012-10-08 14:19 		19
 18,373 by xpzhang
Mon, 2014-04-21 06:47
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45 		6
 5,508 by petrikigor
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35 		4
 5,967 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38 		12
 11,679 by atruong
Mon, 2014-04-21 06:47
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31 		3
 4,156 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28 		1
 3,233 by smlewis
Mon, 2014-04-21 06:47
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29 		7
 6,947 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28 		1
 2,488 by smlewis
Mon, 2014-04-21 06:47
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31 		2
 2,666 by smlewis
Mon, 2014-04-21 06:47
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57 		2
 4,577 by pdbb
Mon, 2014-04-21 06:47
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22 		6
 6,083 by xfliu
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59 		6
 6,418 by rmoretti
Mon, 2014-04-21 06:47
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56 		2
 4,395 by ytao
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27 		7
 7,807 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25 		5
 6,430 by smlewis
Mon, 2014-04-21 06:47
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15 		4
 5,380 by protos_heis
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45 		3
 5,373 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23 		9
 13,113 by joeg
Mon, 2014-04-21 06:47
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31 		1
 2,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18 		1
 2,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09 		2
 3,893 by eskici
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51 		8
 8,243 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32 		0
 1,942 by danielles
Mon, 2014-04-21 06:47
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25 		2
 4,146 by RMJ
Mon, 2014-04-21 06:47
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13 		6
 6,542 by eskici
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49 		6
 7,876 by skovacs
Mon, 2014-04-21 06:47
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56 		2
 3,103 by ytao
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54 		7
 10,275 by attesor
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30 		5
 6,821 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02 		2
 3,150 by mpacella
Mon, 2014-04-21 06:47
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31 		2
 3,860 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52 		1
 2,697 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59 		10
 9,192 by jfhuang
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38 		2
 3,214 by lchen
Mon, 2014-04-21 06:47
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52 		5
 6,575 by Anonymous
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07 		4
 5,322 by smlewis
Mon, 2014-04-21 06:47
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10 		5
 5,876 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43 		4
 4,439 by mdyini
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10 		2
 3,472 by yperez
Mon, 2014-04-21 06:47
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40 		1
 4,706 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21 		5
 7,414 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20 		3
 4,033 by glemmon
Mon, 2014-04-21 06:47
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43 		1
 2,897 by smlewis
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16 		4
 4,411 by fred
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02 		1
 2,581 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49 		4
 4,720 by sacch
Mon, 2014-04-21 06:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45 		2
 3,169 by smlewis
Mon, 2014-04-21 06:47