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Rosetta 3 - Applications
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
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8,080 |
by rmoretti Mon, 2014-04-21 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,256 |
by ctqwong Thu, 2021-03-18 02:04 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,836 |
by petrikigor Mon, 2014-04-21 06:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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4,058 |
by dswhit Tue, 2015-04-21 10:14 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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3,186 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,397 |
by yels Wed, 2021-03-31 18:31 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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958 |
by lanselibai Sat, 2019-12-28 12:51 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,532 |
by matteoferla Mon, 2020-05-04 01:43 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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4,098 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,572 |
by rmoretti Wed, 2019-09-18 10:36 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,848 |
by attesor Mon, 2015-10-26 09:01 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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3,495 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,925 |
by lanselibai Mon, 2014-11-03 13:15 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,793 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
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1,412 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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11,114 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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3,144 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,976 |
by rmoretti Fri, 2018-08-03 08:26 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
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1,173 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,493 |
by cryosky Mon, 2021-03-01 21:37 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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2,305 |
by benhardy Sun, 2020-09-20 11:15 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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2,287 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
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1,919 |
by daniloboskovic Wed, 2020-04-29 05:51 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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818 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,700 |
by rmoretti Fri, 2018-05-18 12:28 |
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Broken structure of local docking of replicadock2 by Jun » Thu, 2023-12-28 00:26 |
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370 |
by Jun Thu, 2023-12-28 00:26 |
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BridgeChains mover deletes residues at break by kmj » Thu, 2024-02-22 12:14 |
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358 |
by kmj Thu, 2024-02-22 12:14 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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1,432 |
by taylorjones Wed, 2021-06-09 16:38 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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2,031 |
by smlewis Mon, 2017-12-04 12:18 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,940 |
by rmoretti Mon, 2014-04-21 06:48 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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1,014 |
by sareeves96 Fri, 2022-07-29 09:55 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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2,295 |
by fred Mon, 2014-04-21 06:47 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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3,443 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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5,380 |
by protos_heis Mon, 2014-04-21 06:47 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,346 |
by tylerborrman Tue, 2016-12-06 14:46 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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4,428 |
by beowulfey Tue, 2015-06-23 16:10 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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2,358 |
by sgourn Tue, 2015-08-18 18:25 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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5,043 |
by rmoretti Mon, 2014-04-21 06:48 |
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Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
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833 |
by uka147 Mon, 2023-10-30 01:53 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,946 |
by smlewis Fri, 2016-12-23 07:04 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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901 |
by SWM Fri, 2020-01-24 11:22 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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1,058 |
by wentlewi Fri, 2020-03-13 03:24 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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2,033 |
by vmulligan Tue, 2020-03-17 11:35 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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3,777 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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3,229 |
by jadolfbr Sun, 2020-03-01 14:54 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,286 |
by drewaight Mon, 2020-11-02 17:07 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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2,479 |
by agctomer Sun, 2021-01-31 01:06 |
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Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
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392 |
by ramon-arg Mon, 2023-07-24 17:56 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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6,538 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,551 |
by smlewis Tue, 2019-10-22 09:45 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,344 |
by smlewis Mon, 2017-02-06 20:46 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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2,079 |
by mxp Mon, 2019-09-23 01:40 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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5,171 |
by rmoretti Wed, 2015-09-09 12:08 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,587 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,480 |
by jadolfbr Wed, 2015-09-09 12:35 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,417 |
by nannemdp Mon, 2021-09-27 14:22 |
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analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
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527 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
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7,284 |
by rmoretti Mon, 2014-04-21 06:47 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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8,691 |
by Genta Tue, 2019-10-29 18:46 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,515 |
by rmoretti Mon, 2014-05-12 08:25 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,831 |
by bp Thu, 2016-12-22 07:54 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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3,452 |
by rmoretti Thu, 2017-08-24 11:00 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,479 |
by yigallah Mon, 2014-12-15 08:46 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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2,545 |
by mags33 Wed, 2019-11-06 09:35 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,805 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,594 |
by brspurri Thu, 2017-06-01 10:58 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,511 |
by everyday847 Fri, 2019-08-23 04:08 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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5,647 |
by purvi24 Mon, 2019-03-11 06:43 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,435 |
by jadolfbr Fri, 2014-10-31 09:00 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,543 |
by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,967 |
by vmulligan Thu, 2019-06-13 14:59 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,762 |
by smlewis Mon, 2014-04-21 06:48 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
5,117 |
by smlewis Mon, 2014-04-21 06:47 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
1,072 |
by sia Wed, 2022-04-27 19:59 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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7,941 |
by rmoretti Mon, 2014-04-21 06:48 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
13,895 |
by Run Mon, 2014-04-21 06:48 |
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Abnormal output of ScoreCutoffFilter by DivingWhale » Thu, 2024-05-30 18:46 |
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181 |
by rmoretti Thu, 2024-06-20 11:45 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,622 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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5,598 |
by ks Mon, 2016-09-12 03:14 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
11,679 |
by atruong Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,560 |
by parmef Mon, 2014-04-21 06:47 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
0 |
975 |
by aarono Tue, 2020-06-02 00:13 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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2,270 |
by rmoretti Fri, 2018-11-23 07:59 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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6,012 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,699 |
by rmoretti Fri, 2019-04-05 00:18 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,886 |
by rmoretti Tue, 2014-11-04 10:28 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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3,118 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,333 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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16,872 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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6,098 |
by rmoretti Mon, 2017-01-23 08:52 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
7,876 |
by skovacs Mon, 2014-04-21 06:47 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
12,406 |
by rmoretti Fri, 2016-04-29 08:57 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,575 |
by rmoretti Mon, 2014-04-21 06:48 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
7,370 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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21,181 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,994 |
by justin Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,514 |
by krlitros87 Wed, 2014-10-22 09:31 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
9,936 |
by rmoretti Tue, 2014-08-12 08:15 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
0 |
841 |
by jseco Mon, 2021-03-08 03:40 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
3,507 |
by malkeet.singh Mon, 2018-05-21 04:26 |