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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51 		5
 7,264 by rmoretti
Mon, 2015-10-12 15:10
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52 		3
 7,285 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41 		4
 7,309 by IAndre
Mon, 2014-04-21 06:47
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38 		15
 7,315 by amorin
Sat, 2021-02-27 20:29
Normal topic InterfaceAnalyzer：“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41 		8
 7,327 by mxp
Mon, 2019-08-12 18:42
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28 		10
 7,334 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35 		7
 7,346 by dktest
Mon, 2014-04-21 06:47
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01 		5
 7,351 by smlewis
Mon, 2014-04-21 06:47
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13 		7
 7,358 by rmoretti
Tue, 2015-08-18 16:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41 		6
 7,371 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56 		6
 7,402 by Marius1987
Fri, 2016-02-05 07:20
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41 		5
 7,404 by rmoretti
Tue, 2015-03-31 08:56
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02 		9
 7,409 by albumns
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58 		6
 7,410 by Aben
Tue, 2023-04-18 01:31
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21 		5
 7,415 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43 		9
 7,428 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05 		7
 7,453 by lanselibai
Tue, 2014-12-02 09:43
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24 		6
 7,477 by petrikigor
Mon, 2014-04-21 06:47
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16 		7
 7,494 by rmoretti
Mon, 2014-11-03 15:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01 		5
 7,586 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52 		6
 7,592 by eyong123
Mon, 2015-06-29 04:44
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53 		6
 7,599 by rmoretti
Wed, 2017-01-11 12:53
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30 		4
 7,635 by lanselibai
Fri, 2014-10-17 05:10
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35 		7
 7,688 by attesor
Wed, 2017-06-14 07:32
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17 		6
 7,747 by jarod
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27 		7
 7,808 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56 		7
 7,812 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22 		5
 7,813 by linucks
Mon, 2016-06-20 12:02
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49 		6
 7,883 by skovacs
Mon, 2014-04-21 06:47
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33 		7
 7,887 by rmoretti
Tue, 2014-11-04 10:28
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32 		8
 7,894 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29 		8
 7,897 by e3lm
Thu, 2022-05-26 12:51
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25 		4
 7,903 by weitzner
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23 		6
 7,908 by rmoretti
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59 		3
 7,911 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08 		5
 7,930 by attesor
Wed, 2015-10-21 13:53
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08 		7
 7,942 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29 		7
 8,031 by dimaio
Mon, 2014-04-21 06:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09 		7
 8,050 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28 		6
 8,081 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56 		7
 8,087 by lanselibai
Wed, 2014-11-12 11:17
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59 		9
 8,092 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45 		6
 8,230 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51 		8
 8,244 by Anonymous
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11 		3
 8,252 by fred
Thu, 2014-03-27 11:29
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03 		8
 8,362 by a_s_a
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38 		8
 8,399 by fred
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47 		6
 8,430 by lzx32
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31 		8
 8,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46 		0
 8,692 by Genta
Tue, 2019-10-29 18:46
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54 		7
 8,828 by eyong123
Wed, 2015-12-09 07:17
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14 		6
 8,856 by rmoretti
Wed, 2015-09-02 12:43
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41 		6
 8,879 by rmoretti
Fri, 2014-02-07 08:01
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13 		7
 8,888 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ensemble Docking in Rosetta3.5?
by protos_heis » Fri, 2015-05-22 06:42 		7
 8,895 by protos_heis
Mon, 2015-06-08 07:00
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04 		8
 8,977 by benniu2004
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36 		9
 9,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13 		9
 9,128 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Where is the RosettaHoles2 executable?
by lah435 » Mon, 2012-06-04 15:15 		11
 9,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19 		8
 9,179 by glemmon
Mon, 2014-04-21 06:47
Normal topic how to repacking loop while freezing other residues?
by jfhuang » Wed, 2012-07-25 06:59 		10
 9,194 by jfhuang
Mon, 2014-04-21 06:47
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32 		12
 9,234 by Anpu
Tue, 2018-09-25 19:06
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11 		9
 9,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35 		5
 9,371 by deltag
Mon, 2014-04-21 06:47
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20 		7
 9,397 by helenah
Thu, 2020-10-08 05:29
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36 		12
 9,476 by Corvin
Tue, 2020-11-10 01:22
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22 		9
 9,529 by ast
Thu, 2014-03-13 07:17
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24 		5
 9,762 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic ab initio membrane error (frag9 file...)
by almeida » Mon, 2012-07-30 08:53 		9
 9,937 by rmoretti
Tue, 2014-08-12 08:15
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01 		11
 9,967 by cossio
Mon, 2016-11-21 07:56
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30 		5
 10,084 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09 		10
 10,225 by deltag
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54 		7
 10,276 by attesor
Mon, 2014-04-21 06:47
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13 		8
 10,321 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27 		10
 10,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34 		6
 10,574 by lanselibai
Wed, 2014-10-01 02:13
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23 		15
 10,775 by smlewis
Fri, 2017-09-08 09:16
Normal topic How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time
by Anatol » Thu, 2012-11-29 14:12 		11
 11,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52 		13
 11,128 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic "ddg_monomer.linuxgccrelease" by following "High Resolution Protocol"
by lanselibai » Wed, 2014-10-01 09:54 		7
 11,179 by lanselibai
Sat, 2015-01-03 08:18
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02 		10
 11,234 by lanselibai
Tue, 2014-10-07 02:58
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22 		12
 11,371 by smlewis
Wed, 2016-08-17 07:56
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46 		11
 11,506 by akpole
Mon, 2014-04-21 06:47
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23 		8
 11,558 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35 		10
 11,648 by egecav
Mon, 2021-01-18 05:41
Normal topic AbinitioRelax usage (3.4)
by atruong » Fri, 2012-10-12 13:38 		12
 11,680 by atruong
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45 		9
 12,054 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46 		9
 12,078 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20 		9
 12,407 by rmoretti
Fri, 2016-04-29 08:57
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43 		10
 12,410 by kamau
Mon, 2014-09-22 09:39
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23 		11
 12,589 by rmoretti
Fri, 2016-06-17 10:22
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19 		13
 12,897 by fred
Mon, 2014-04-21 06:47
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53 		11
 12,952 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07 		11
 12,953 by jarod
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23 		9
 13,114 by joeg
Mon, 2014-04-21 06:47
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18 		6
 13,676 by rmoretti
Fri, 2015-09-11 13:27
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13 		15
 13,784 by belousoff
Mon, 2017-06-26 16:46
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54 		14
 13,896 by Run
Mon, 2014-04-21 06:48
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22 		11
 14,100 by starone
Fri, 2016-06-24 18:29
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18 		12
 14,202 by rmoretti
Thu, 2014-04-24 14:43