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Rosetta 3 - Applications
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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4,094 |
by rmoretti Mon, 2014-05-12 15:16 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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3,418 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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2,238 |
by rmoretti Tue, 2022-03-22 09:10 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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2,233 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,975 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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2,342 |
by nannemdp Sun, 2020-05-24 14:46 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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6,399 |
by nannemdp Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,959 |
by He Xiao Sun, 2021-04-11 19:29 |
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PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59 by intomybioverse » Wed, 2024-05-15 23:38 |
3 |
390 |
by rmoretti Mon, 2024-05-20 07:22 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,300 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
4,078 |
by rmoretti Tue, 2016-07-12 09:41 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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21,224 |
by rmoretti Fri, 2014-10-17 10:17 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,789 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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3,444 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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3,199 |
by smlewis Mon, 2017-01-23 06:26 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
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4,157 |
by smlewis Mon, 2014-04-21 06:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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5,390 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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5,316 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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2,153 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,499 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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5,171 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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3,145 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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2,508 |
by smlewis Thu, 2020-05-21 21:05 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
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3,714 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
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4,034 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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4,860 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
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8,252 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,601 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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2,710 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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3,187 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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2,058 |
by everyday847 Wed, 2020-12-09 21:46 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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4,751 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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2,806 |
by rmoretti Wed, 2019-09-18 10:21 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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4,379 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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4,059 |
by dswhit Tue, 2015-04-21 10:14 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
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6,638 |
by rmoretti Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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5,015 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
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705 |
by ng98 Tue, 2024-01-09 23:42 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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5,220 |
by Sajjad Wed, 2022-11-30 11:50 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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5,282 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,972 |
by fukamitka Mon, 2014-04-21 06:47 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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3,743 |
by rmoretti Thu, 2017-04-20 13:59 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,508 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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4,605 |
by gw Mon, 2014-04-21 06:47 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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4,206 |
by nkemjika Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
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3,802 |
by cn Mon, 2014-04-21 06:47 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
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6,094 |
by rmoretti Tue, 2017-06-20 09:02 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
4,273 |
by smlewis Sat, 2017-12-23 15:56 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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4,520 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
4,117 |
by rmoretti Fri, 2015-06-19 13:53 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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3,156 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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3,265 |
by mintseris Wed, 2015-06-24 22:04 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,777 |
by smlewis Mon, 2014-04-21 06:47 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,243 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,440 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,490 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,357 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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3,100 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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2,152 |
by Martin Floor Tue, 2020-01-21 11:15 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
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681 |
by lluoto Wed, 2024-02-21 17:39 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,957 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,882 |
by jlawrie Wed, 2020-08-12 08:57 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,589 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,968 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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4,653 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,391 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,578 |
by pdbb Mon, 2014-04-21 06:47 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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2,259 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,473 |
by yperez Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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2,809 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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1,788 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,623 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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4,191 |
by jrcf Mon, 2015-09-21 11:10 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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762 |
by lei Wed, 2023-09-13 19:35 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,826 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,639 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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1,916 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,608 |
by zivben Sat, 2021-11-13 04:49 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,853 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,595 |
by brspurri Thu, 2017-06-01 10:58 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,354 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,969 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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1,913 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,565 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,720 |
by alexn Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,104 |
by ytao Mon, 2014-04-21 06:47 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,650 |
by vmulligan Tue, 2021-07-06 08:27 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,397 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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3,949 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,473 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,695 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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1,759 |
by yliang20 Wed, 2022-06-15 13:46 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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3,027 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,602 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
2,462 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
2,355 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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819 |
by josiefanxu Tue, 2024-05-14 21:17 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,968 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,633 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
1,617 |
by csaylan Tue, 2021-04-20 16:13 |