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Rosetta 3 - Applications
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,560 |
by parmef Mon, 2014-04-21 06:47 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,797 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,469 |
by danpf Fri, 2020-02-21 18:23 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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3,293 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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3,304 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,707 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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1,099 |
by matteoferla Wed, 2022-07-20 10:50 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,555 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,766 |
by smlewis Mon, 2014-04-21 06:48 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
1,578 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,342 |
by matteoferla Wed, 2021-09-15 06:04 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,709 |
by smlewis Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
1 |
2,495 |
by smlewis Mon, 2014-04-21 06:47 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
2,353 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
1,628 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
1 |
1,971 |
by danpf Sun, 2020-08-30 22:23 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
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249 |
by rmoretti Mon, 2024-03-18 08:55 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
2,219 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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2,047 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
1,201 |
by CameronJA Tue, 2021-06-15 20:02 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,805 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,613 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,632 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,794 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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4,195 |
by smlewis Mon, 2014-04-21 06:47 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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2,054 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,877 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,976 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,610 |
by bjharris Wed, 2020-07-01 23:25 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,733 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,369 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,361 |
by brspurri Wed, 2021-01-20 08:11 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,578 |
by smlewis Mon, 2014-04-21 06:47 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,635 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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1,311 |
by rmoretti Fri, 2020-11-27 10:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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3,155 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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3,264 |
by mintseris Wed, 2015-06-24 22:04 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
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3,775 |
by smlewis Mon, 2014-04-21 06:47 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,241 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,439 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,489 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,356 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
3,099 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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2,152 |
by Martin Floor Tue, 2020-01-21 11:15 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
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679 |
by lluoto Wed, 2024-02-21 17:39 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,956 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,880 |
by jlawrie Wed, 2020-08-12 08:57 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,588 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,968 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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4,652 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,390 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,577 |
by pdbb Mon, 2014-04-21 06:47 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
2,257 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,472 |
by yperez Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,808 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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1,785 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,622 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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4,190 |
by jrcf Mon, 2015-09-21 11:10 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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760 |
by lei Wed, 2023-09-13 19:35 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,825 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
3,639 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,914 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,606 |
by zivben Sat, 2021-11-13 04:49 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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1,911 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,852 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,594 |
by brspurri Thu, 2017-06-01 10:58 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,353 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,968 |
by mumdonar Mon, 2014-04-21 06:48 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,563 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,719 |
by alexn Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,103 |
by ytao Mon, 2014-04-21 06:47 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,648 |
by vmulligan Tue, 2021-07-06 08:27 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,396 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,948 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,472 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,693 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,757 |
by yliang20 Wed, 2022-06-15 13:46 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
2 |
1,615 |
by csaylan Tue, 2021-04-20 16:13 |
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How to debug the XML script file? by intomybioverse » Wed, 2024-03-06 06:32 |
2 |
405 |
by rmoretti Wed, 2024-03-06 06:51 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
3,026 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
3,601 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
2,461 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
2,353 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
2 |
817 |
by josiefanxu Tue, 2024-05-14 21:17 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,967 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,632 |
by sumukh21 Mon, 2014-04-21 06:47 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,735 |
by libai2098 Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
4,178 |
by agulsevin Mon, 2014-04-21 06:48 |
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How to use rewrite_rosetta_script.py to update XML script file? by intomybioverse » Fri, 2024-03-15 06:44 |
2 |
366 |
by intomybioverse Sun, 2024-03-17 06:22 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
3,262 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
2 |
2,546 |
by mags33 Wed, 2019-11-06 09:35 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
2 |
778 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,697 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,802 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
2,568 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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1,764 |
by brspurri Thu, 2020-05-14 12:24 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
3,391 |
by felipet Wed, 2014-07-02 07:26 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,821 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,739 |
by tingting Tue, 2022-03-15 23:55 |