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Rosetta 3 - Applications
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,540 |
by ashu4487 Sun, 2016-12-11 19:03 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,534 |
by rmoretti Fri, 2021-07-09 15:05 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,463 |
by a_s_a Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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4,191 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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3,202 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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2,390 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,668 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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1,580 |
by jxw Wed, 2023-10-11 10:04 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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3,118 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,856 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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4,146 |
by RMJ Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,602 |
by deltag Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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4,072 |
by jarod Mon, 2014-04-21 06:47 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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3,144 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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2,581 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,774 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,749 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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3,388 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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2,038 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,674 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,869 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,818 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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4,090 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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3,164 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,666 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,758 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,899 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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1,745 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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3,155 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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3,264 |
by mintseris Wed, 2015-06-24 22:04 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
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3,775 |
by smlewis Mon, 2014-04-21 06:47 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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2,241 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,439 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,489 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,356 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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3,099 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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2,152 |
by Martin Floor Tue, 2020-01-21 11:15 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
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679 |
by lluoto Wed, 2024-02-21 17:39 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,956 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,880 |
by jlawrie Wed, 2020-08-12 08:57 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,588 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,968 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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4,652 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,391 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,577 |
by pdbb Mon, 2014-04-21 06:47 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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2,257 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,472 |
by yperez Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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2,808 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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1,785 |
by almeida85 Wed, 2020-09-02 06:14 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,622 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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4,190 |
by jrcf Mon, 2015-09-21 11:10 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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760 |
by lei Wed, 2023-09-13 19:35 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,825 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,639 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
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1,914 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,606 |
by zivben Sat, 2021-11-13 04:49 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,852 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,594 |
by brspurri Thu, 2017-06-01 10:58 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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3,353 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
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3,968 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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1,911 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,563 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,719 |
by alexn Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
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3,103 |
by ytao Mon, 2014-04-21 06:47 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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1,648 |
by vmulligan Tue, 2021-07-06 08:27 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
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3,396 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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3,948 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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3,473 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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1,693 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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1,757 |
by yliang20 Wed, 2022-06-15 13:46 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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3,026 |
by jharamesh Sat, 2015-08-08 19:51 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,601 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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2,462 |
by tsztain Mon, 2019-02-18 09:55 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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2,353 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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817 |
by josiefanxu Tue, 2024-05-14 21:17 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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3,967 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,632 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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1,615 |
by csaylan Tue, 2021-04-20 16:13 |
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How to debug the XML script file? by intomybioverse » Wed, 2024-03-06 06:32 |
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405 |
by rmoretti Wed, 2024-03-06 06:51 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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4,735 |
by libai2098 Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
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4,178 |
by agulsevin Mon, 2014-04-21 06:48 |
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How to use rewrite_rosetta_script.py to update XML script file? by intomybioverse » Fri, 2024-03-15 06:44 |
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366 |
by intomybioverse Sun, 2024-03-17 06:22 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
3,262 |
by smlewis Fri, 2017-01-27 07:20 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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2,546 |
by mags33 Wed, 2019-11-06 09:35 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
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778 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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3,697 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,802 |
by ays Tue, 2014-09-30 08:31 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
2,569 |
by rmoretti Thu, 2018-09-20 09:19 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
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1,764 |
by brspurri Thu, 2020-05-14 12:24 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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3,391 |
by felipet Wed, 2014-07-02 07:26 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
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3,821 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,739 |
by tingting Tue, 2022-03-15 23:55 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
2,583 |
by gszwabowski Wed, 2019-06-26 10:25 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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2,373 |
by dnamkr Mon, 2019-12-30 11:43 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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3,061 |
by sacch Mon, 2014-04-21 06:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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1,759 |
by Astghik Thu, 2020-12-03 02:35 |
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ligand_docking by yang » Thu, 2023-02-16 04:37 |
2 |
2,661 |
by yang Wed, 2023-02-22 19:18 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,783 |
by loreseeker Mon, 2014-04-21 06:47 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,652 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
2,788 |
by cossio Sun, 2018-03-11 09:12 |