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Rosetta 3 - Applications
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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4,205 |
by nkemjika Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,887 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,385 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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1,190 |
by jlawrie Wed, 2020-08-12 08:47 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,586 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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946 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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1,080 |
by LanMei Wed, 2020-10-07 09:58 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,818 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
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2,231 |
by brspurri Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
5,353 |
by tsztain Tue, 2018-12-11 13:41 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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2,591 |
by rmoretti Tue, 2015-07-14 14:59 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
7,746 |
by jarod Mon, 2014-04-21 06:47 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
2,081 |
by rmoretti Thu, 2017-08-03 09:29 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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3,001 |
by ssrb Fri, 2020-08-14 09:18 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
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1,330 |
by benhardy Thu, 2020-05-28 08:45 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,979 |
by jhm13c Thu, 2017-03-02 12:01 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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863 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
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3,893 |
by eskici Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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5,508 |
by yogeshkd Mon, 2014-04-21 06:47 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
61,400 |
by rmoretti Fri, 2018-05-18 12:40 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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3,278 |
by Jane_002 Thu, 2023-08-03 19:47 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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5,821 |
by smlewis Thu, 2018-06-14 10:26 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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4,385 |
by tong Sun, 2018-06-24 23:30 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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2,332 |
by rmoretti Wed, 2019-07-10 09:22 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,330 |
by chandana Tue, 2022-08-09 20:36 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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1,993 |
by matteoferla Sat, 2021-06-19 03:07 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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1,283 |
by marinok Mon, 2020-09-28 14:11 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
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6,575 |
by Anonymous Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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3,082 |
by smlewis Mon, 2018-10-15 08:42 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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9,389 |
by helenah Thu, 2020-10-08 05:29 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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1,037 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
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3,040 |
by rmoretti Tue, 2017-04-25 06:41 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,926 |
by jarod Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
12,588 |
by rmoretti Fri, 2016-06-17 10:22 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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2,135 |
by rmoretti Fri, 2016-06-17 10:24 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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3,640 |
by jrcf Fri, 2016-02-12 16:42 |
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nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
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510 |
by lei Wed, 2023-11-22 06:23 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
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517 |
by top-gun98 Wed, 2023-06-07 17:19 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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7,889 |
by e3lm Thu, 2022-05-26 12:51 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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4,190 |
by jrcf Mon, 2015-09-21 11:10 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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2,257 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,842 |
by chrisHKL Wed, 2020-03-04 10:49 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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4,411 |
by fred Mon, 2014-04-21 06:47 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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1,970 |
by amorin Fri, 2021-02-12 08:53 |
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Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
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365 |
by mandar Tue, 2024-03-12 23:07 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,733 |
by smlewis Mon, 2014-04-21 06:47 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,265 |
by rmoretti Fri, 2022-09-23 09:38 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
2,038 |
by bjharris Thu, 2020-07-02 11:09 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
3,022 |
by danpf Fri, 2020-02-21 18:32 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
3,077 |
by rmoretti Thu, 2014-03-13 08:04 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
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9,528 |
by ast Thu, 2014-03-13 07:17 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,681 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
2,418 |
by rmoretti Mon, 2015-02-09 12:33 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,876 |
by rmoretti Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
7,258 |
by rmoretti Mon, 2014-04-21 06:47 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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2,203 |
by rmoretti Mon, 2017-07-03 09:17 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
3,263 |
by smlewis Fri, 2017-01-27 07:20 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
5,234 |
by Anonymous Mon, 2014-04-21 06:47 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,910 |
by rmoretti Mon, 2014-04-21 06:47 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
950 |
by e3lm Thu, 2022-05-26 12:55 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
9,757 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,361 |
by smlewis Mon, 2014-04-21 06:47 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,878 |
by rmoretti Thu, 2017-05-18 13:51 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
0 |
820 |
by georg Thu, 2021-04-08 09:31 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
821 |
by code_Monkey Mon, 2021-04-05 10:40 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
1,479 |
by rmoretti Mon, 2019-08-26 12:17 |
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PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59 by intomybioverse » Wed, 2024-05-15 23:38 |
3 |
387 |
by rmoretti Mon, 2024-05-20 07:22 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
6,665 |
by brspurri Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
1,598 |
by smlewis Fri, 2018-07-27 13:32 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
4,033 |
by rmoretti Mon, 2014-04-21 06:48 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,910 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,783 |
by loreseeker Mon, 2014-04-21 06:47 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
938 |
by almeida85 Thu, 2022-06-23 05:50 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
1,089 |
by Soler Fri, 2020-09-18 08:09 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
895 |
by Soler Wed, 2020-09-16 19:08 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
1,307 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
3,795 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
1,396 |
by almeida85 Mon, 2022-05-02 05:05 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,575 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,713 |
by shaunmk Mon, 2015-04-27 02:33 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
4,358 |
by rmoretti Wed, 2015-09-02 12:33 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
824 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
3,601 |
by sn Mon, 2017-03-06 10:03 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,591 |
by attesor Mon, 2014-06-16 07:34 |
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PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
0 |
414 |
by Skelly Tue, 2024-01-30 14:08 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
2,114 |
by rmoretti Fri, 2017-09-15 13:11 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
1,516 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
3,304 |
by ic3reyes Mon, 2014-04-21 06:47 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
0 |
889 |
by Roberto Thu, 2022-08-04 07:11 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,569 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
6,104 |
by felipet Wed, 2015-02-11 05:13 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,515 |
by G Mustafa Wed, 2018-10-17 05:41 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
1,311 |
by rmoretti Fri, 2020-11-27 10:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,842 |
by kxiao Thu, 2014-06-05 08:37 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,158 |
by franfdez Mon, 2014-07-28 01:04 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
1,623 |
by jadolfbr Fri, 2018-11-09 14:28 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
0 |
1,319 |
by xfradera Fri, 2023-01-27 06:36 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
961 |
by almeida85 Thu, 2022-09-08 06:54 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,445 |
by sacch Mon, 2014-04-21 06:47 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,798 |
by Corvin Wed, 2020-11-25 02:58 |