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Rosetta 3 - Applications
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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3,187 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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3,191 |
by dgront Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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3,198 |
by smlewis Mon, 2017-01-23 06:26 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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3,203 |
by rmoretti Tue, 2017-03-28 08:51 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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3,214 |
by lchen Mon, 2014-04-21 06:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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3,225 |
by rmoretti Tue, 2016-01-05 08:35 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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3,229 |
by jadolfbr Mon, 2014-10-20 13:42 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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3,230 |
by jadolfbr Sun, 2020-03-01 14:54 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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3,233 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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3,236 |
by smlewis Mon, 2014-04-21 06:47 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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3,237 |
by bogac Tue, 2017-03-07 02:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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3,238 |
by jadolfbr Fri, 2021-01-15 08:06 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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3,240 |
by rmoretti Mon, 2015-05-25 11:49 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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3,247 |
by staciekim Thu, 2017-08-17 17:06 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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3,249 |
by lanselibai Wed, 2015-01-21 02:40 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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3,255 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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3,256 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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3,257 |
by danpf Fri, 2019-09-06 11:29 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,257 |
by ctqwong Thu, 2021-03-18 02:04 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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3,258 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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3,263 |
by smlewis Fri, 2017-01-27 07:20 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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3,264 |
by mintseris Wed, 2015-06-24 22:04 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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3,264 |
by rmoretti Fri, 2015-01-02 11:45 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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3,265 |
by rmoretti Fri, 2015-09-04 10:25 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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3,278 |
by Jane_002 Thu, 2023-08-03 19:47 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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3,286 |
by everyday847 Wed, 2020-05-20 08:52 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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3,293 |
by smlewis Mon, 2014-05-12 08:32 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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3,295 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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3,304 |
by rmoretti Fri, 2016-04-29 09:21 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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3,304 |
by ic3reyes Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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3,323 |
by rmoretti Mon, 2014-04-21 06:48 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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by cossio Tue, 2015-09-15 12:48 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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by chelsell Wed, 2014-10-08 12:25 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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3,346 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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3,353 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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3,353 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,356 |
by attesor Tue, 2015-11-17 07:36 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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3,362 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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3,365 |
by rmoretti Thu, 2017-02-02 09:02 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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3,369 |
by banshee Mon, 2016-09-12 23:41 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
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3,371 |
by exchhattu Mon, 2014-04-21 06:47 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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by xinmiaohe Tue, 2019-08-27 08:37 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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3,377 |
by rmoretti Thu, 2018-06-28 12:58 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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3,379 |
by rmoretti Sat, 2015-07-11 13:38 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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3,388 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,388 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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3,388 |
by Astghik Thu, 2020-10-15 00:48 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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3,391 |
by felipet Wed, 2014-07-02 07:26 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
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3,396 |
by smlewis Mon, 2014-04-21 06:47 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,398 |
by yels Wed, 2021-03-31 18:31 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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3,402 |
by smlewis Wed, 2021-12-08 13:02 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
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3,413 |
by MajorID Mon, 2014-04-21 06:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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3,418 |
by smlewis Wed, 2017-02-15 07:43 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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3,419 |
by ashu4487 Mon, 2018-07-16 19:24 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
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3,428 |
by ast Mon, 2014-04-21 06:48 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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3,429 |
by smlewis Mon, 2019-09-23 11:42 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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3,435 |
by vmulligan Fri, 2020-04-10 02:54 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,439 |
by tfliu Mon, 2014-04-21 06:48 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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3,439 |
by asbelx Mon, 2018-06-18 22:34 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,440 |
by rmoretti Mon, 2014-10-06 16:00 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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3,444 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
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3,445 |
by sacch Mon, 2014-04-21 06:47 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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3,451 |
by rmoretti Fri, 2019-03-29 12:25 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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3,453 |
by rmoretti Thu, 2017-08-24 11:00 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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3,458 |
by Payne Tue, 2022-06-21 07:25 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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3,463 |
by mark.wilson Mon, 2014-04-21 06:47 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,463 |
by a_s_a Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,463 |
by ahonegger Fri, 2014-06-06 09:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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3,467 |
by rmoretti Wed, 2017-03-01 13:10 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,472 |
by yperez Mon, 2014-04-21 06:47 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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3,473 |
by shadrinams Wed, 2018-03-14 07:46 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,475 |
by fred Mon, 2014-04-21 06:48 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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3,475 |
by rmoretti Wed, 2018-03-07 08:44 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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3,475 |
by cossio Fri, 2018-05-18 09:51 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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3,490 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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3,496 |
by subha Fri, 2018-04-20 12:49 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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3,496 |
by jadolfbr Sun, 2020-12-06 17:41 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,498 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,508 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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3,514 |
by ziruiw Fri, 2021-04-30 12:01 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,514 |
by krlitros87 Wed, 2014-10-22 09:31 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,515 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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3,543 |
by sn Thu, 2017-04-20 21:43 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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3,552 |
by danpf Tue, 2020-05-12 10:58 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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3,552 |
by Wizard Sun, 2015-04-26 22:36 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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3,555 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,575 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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3,583 |
by Loki01 Thu, 2018-04-12 08:28 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,588 |
by ahonegger Mon, 2014-05-12 09:08 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,591 |
by attesor Mon, 2014-06-16 07:34 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,595 |
by brspurri Thu, 2017-06-01 10:58 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,601 |
by sn Mon, 2017-03-06 10:03 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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3,601 |
by rmoretti Tue, 2020-07-14 10:54 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,602 |
by deltag Mon, 2014-04-21 06:47 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,602 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,622 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,622 |
by lanselibai Mon, 2014-10-13 10:10 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,632 |
by sumukh21 Mon, 2014-04-21 06:47 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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3,634 |
by dantimatter Wed, 2019-10-30 09:43 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,639 |
by rmoretti Mon, 2019-11-04 13:56 |