You are here
Rosetta 3 - Applications
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,685 |
by jennifer Wed, 2015-04-08 05:29 |
|
|
ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
4,999 |
by katherinemccoy Tue, 2023-02-28 18:19 |
|
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
2,210 |
by erpannec Thu, 2022-09-15 05:17 |
|
|
reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
2,141 |
by everyday847 Fri, 2019-03-29 13:13 |
|
|
Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,579 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,805 |
by cossio Mon, 2015-01-19 07:14 |
|
|
Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,750 |
by nawsad Mon, 2014-04-21 06:47 |
|
|
Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
2,145 |
by smlewis Mon, 2015-06-08 06:35 |
|
|
Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
0 |
925 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
|
|
residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
3,156 |
by Pernille Wed, 2014-10-08 10:41 |
|
|
residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
1 |
1,424 |
by rmoretti Tue, 2021-05-18 07:21 |
|
|
Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,802 |
by cn Mon, 2014-04-21 06:47 |
|
|
restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,718 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
6,807 |
by yogeshkd Mon, 2014-04-21 06:47 |
|
|
revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
4,349 |
by rmoretti Tue, 2016-07-12 09:30 |
|
|
RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
2,027 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,463 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
4,335 |
by rmoretti Wed, 2016-09-14 02:05 |
|
|
Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
3,291 |
by everyday847 Wed, 2020-05-20 08:52 |
|
|
RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
2,058 |
by everyday847 Wed, 2020-12-09 21:46 |
|
|
RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
6,066 |
by rmoretti Mon, 2014-02-24 09:12 |
|
|
rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
6,113 |
by mkoohim Mon, 2014-04-21 06:47 |
|
|
RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
1,027 |
by daniloboskovic Fri, 2019-08-16 11:17 |
|
|
Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,423 |
by benhardy Wed, 2020-09-30 08:42 |
|
|
rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
1 |
2,571 |
by rmoretti Mon, 2014-07-21 10:51 |
|
|
Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
4,321 |
by ahonegger Mon, 2014-04-21 06:47 |
|
|
Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
3,434 |
by smlewis Mon, 2019-09-23 11:42 |
|
|
Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,916 |
by cm21 Wed, 2020-05-20 11:22 |
|
|
Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
2,304 |
by nannemdp Wed, 2021-02-03 08:52 |
|
|
rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
4,295 |
by smlewis Tue, 2017-07-11 07:53 |
|
|
rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,648 |
by ladimafakher Thu, 2018-11-01 03:47 |
|
|
Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
780 |
by ddhoyo Mon, 2021-10-11 06:18 |
|
|
Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
2 |
780 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
|
|
Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,677 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
7,264 |
by rmoretti Mon, 2015-10-12 15:10 |
|
|
Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
2,048 |
by smlewis Mon, 2017-02-06 06:57 |
|
|
Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
2,160 |
by Danielsebas Sun, 2019-09-01 02:38 |
|
|
Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
4,257 |
by rmoretti Mon, 2015-10-12 15:20 |
|
|
Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
2,153 |
by vizcarra Thu, 2021-08-26 10:16 |
|
|
Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,581 |
by Danielsebas Thu, 2019-09-05 03:35 |
|
|
Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
1,171 |
by Hirbond Tue, 2022-03-01 13:16 |
|
|
rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
7,351 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
5,733 |
by jingwei xu Wed, 2016-05-04 23:28 |
|
|
Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
3,459 |
by Payne Tue, 2022-06-21 07:25 |
|
|
Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
1,038 |
by daniloboskovic Fri, 2020-04-10 04:24 |
|
|
rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
1,290 |
by dhirajks Thu, 2018-12-13 19:34 |
|
|
Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
9,371 |
by deltag Mon, 2014-04-21 06:47 |
|
|
Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
4,526 |
by cdegut Fri, 2017-11-03 05:50 |
|
|
rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,950 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
10,276 |
by attesor Mon, 2014-04-21 06:47 |
|
|
Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
2,788 |
by cossio Sun, 2018-03-11 09:12 |
|
|
Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
1,731 |
by danpf Fri, 2020-02-21 18:37 |
|
|
Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
20,363 |
by aroop Mon, 2014-04-21 06:47 |
|
|
Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
4,935 |
by David Weis Mon, 2017-03-13 10:59 |
|
|
rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,817 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
15,336 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
6,286 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
4,408 |
by dgront Mon, 2014-04-21 06:47 |
|
|
RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
5,176 |
by jianqing Mon, 2014-04-21 06:47 |
|
|
RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
1,022 |
by agctomer Tue, 2021-01-19 22:45 |
|
|
RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,822 |
by esozdemir Thu, 2019-06-13 12:19 |
|
|
RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
916 |
by brspurri Fri, 2020-08-28 09:11 |
|
|
RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
1,055 |
by linhhoang157 Tue, 2020-07-28 12:40 |
|
|
RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,957 |
by brspurri Tue, 2020-08-18 09:57 |
|
|
RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
3,161 |
by brspurri Wed, 2020-06-03 13:20 |
|
|
RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
1,766 |
by brspurri Thu, 2020-05-14 12:24 |
|
|
RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
0 |
1,589 |
by jlawrie Fri, 2020-08-14 14:09 |
|
|
RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
3,199 |
by smlewis Mon, 2017-01-23 06:26 |
|
|
RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
5,256 |
by rmoretti Thu, 2017-06-01 08:52 |
|
|
RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
7,586 |
by rmoretti Tue, 2015-11-24 15:30 |
|
|
RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
2,541 |
by dnamkr Thu, 2019-12-26 10:22 |
|
|
RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
4,034 |
by Delfosse57 Sun, 2022-12-04 12:05 |
|
|
RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
3,365 |
by rmoretti Thu, 2017-02-02 09:02 |
|
|
rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
17,448 |
by rmoretti Wed, 2018-11-21 15:45 |
|
|
RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
2,312 |
by danpf Thu, 2020-09-24 13:44 |
|
|
RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
5,031 |
by rmoretti Thu, 2017-01-19 09:11 |
|
|
RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
1,144 |
by vmulligan Wed, 2021-04-28 12:59 |
|
|
RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
2,636 |
by haom Tue, 2020-06-16 05:55 |
|
|
RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
4,259 |
by xingqing326 Tue, 2020-04-21 19:11 |
|
|
RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
10,225 |
by deltag Mon, 2014-04-21 06:47 |
|
|
RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
13,114 |
by joeg Mon, 2014-04-21 06:47 |
|
|
RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
2,238 |
by rmoretti Tue, 2022-03-22 09:10 |
|
|
RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,529 |
by ozsolomon Thu, 2021-10-07 14:25 |
|
|
RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
7,182 |
by Gerdes Fri, 2014-02-07 06:48 |
|
|
RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
2,287 |
by rmoretti Tue, 2018-01-16 07:24 |
|
|
RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
2,509 |
by sam_dc Mon, 2021-04-12 07:24 |
|
|
ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
3,226 |
by rmoretti Tue, 2016-01-05 08:35 |
|
|
RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
6,022 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
|
|
RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
1,971 |
by rmoretti Mon, 2019-08-26 12:57 |
|
|
RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
2,270 |
by mwfranklin Mon, 2016-07-25 11:49 |
|
|
RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
2,354 |
by rmoretti Fri, 2016-10-14 08:56 |
|
|
RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
3,748 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
|
|
RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,777 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
7,812 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,811 |
by kamau Wed, 2017-12-13 14:31 |
|
|
RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
2,584 |
by chrisHKL Thu, 2020-03-05 09:11 |
|
|
RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,192 |
by jtmacd Fri, 2015-12-04 03:11 |
|
|
RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,864 |
by rmoretti Fri, 2016-04-29 08:26 |
|
|
RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,972 |
by zdaw Tue, 2020-12-15 15:38 |
|
|
RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,440 |
by Yero Thu, 2019-07-18 01:39 |