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Rosetta 3 - General
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Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
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556 |
by Martin Floor Sat, 2023-10-07 10:17 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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640 |
by almeida85 Thu, 2022-11-17 01:04 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,816 |
by exchhattu Mon, 2014-04-21 06:47 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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892 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
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339 |
by rnogy Mon, 2023-11-06 17:06 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,574 |
by gobli033 Mon, 2014-04-21 06:47 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,502 |
by albumns Mon, 2014-04-21 06:47 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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870 |
by jeanramos Mon, 2020-07-13 00:56 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,606 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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1,012 |
by rohi Mon, 2021-03-15 06:31 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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448 |
by JasonIsaac Tue, 2023-05-02 03:39 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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709 |
by mgupta Fri, 2022-12-09 01:03 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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804 |
by tisozaki Tue, 2021-12-14 17:16 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,677 |
by sdh Mon, 2014-04-21 06:47 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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1,077 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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933 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Canceling jobs - RosettaDock5.0 by katie » Tue, 2024-04-09 12:30 |
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165 |
by katie Tue, 2024-04-09 12:30 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
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1,570 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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998 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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422 |
by mrosam Thu, 2023-05-25 05:14 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
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1,539 |
by tricia Mon, 2014-04-21 06:47 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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1,227 |
by zhoubin Fri, 2019-01-04 13:14 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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1,064 |
by Kazu Wed, 2020-05-20 11:58 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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1,002 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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565 |
by JasonIsaac Wed, 2023-02-22 18:36 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,661 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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1,002 |
by kalabharath Mon, 2020-06-29 06:59 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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783 |
by CameronJA Mon, 2021-06-14 16:12 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,668 |
by DanielK Mon, 2014-04-21 06:47 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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1,191 |
by bio_james Wed, 2017-12-13 09:13 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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1,164 |
by bazzoli Wed, 2018-10-10 01:59 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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598 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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446 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,805 |
by w107kdk Mon, 2014-04-21 06:47 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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1,131 |
by BioPython Sun, 2019-05-12 20:07 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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858 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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Segmentation Fault by ileanexis » Mon, 2024-03-11 08:53 |
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211 |
by ileanexis Mon, 2024-03-11 08:53 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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683 |
by tlopes Wed, 2022-01-05 18:19 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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1,188 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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904 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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774 |
by guowuchen Thu, 2022-06-23 04:43 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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1,205 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
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564 |
by Wexter300 Sat, 2023-09-16 14:23 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,592 |
by justin Mon, 2014-04-21 06:47 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,312 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,267 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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2,055 |
by wtscrystal Mon, 2014-04-21 06:47 |
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protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
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317 |
by LUOD Thu, 2023-11-02 18:25 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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1,094 |
by Anpu Thu, 2018-09-27 23:36 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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550 |
by Hyun Tue, 2022-03-29 19:53 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,618 |
by justin Mon, 2014-04-21 06:47 |
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Rigidifying ligand by Daniel_Levin » Sun, 2024-02-18 12:10 |
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359 |
by Daniel_Levin Sun, 2024-02-18 12:10 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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1,117 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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456 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,696 |
by abhishek Mon, 2014-04-21 06:47 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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648 |
by mb0261 Tue, 2022-12-06 10:16 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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1,074 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,639 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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425 |
by seamoon Wed, 2023-05-24 07:46 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,552 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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1,148 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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479 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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1,181 |
by ac.research Mon, 2018-05-14 08:27 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,964 |
by Trentage Mon, 2014-04-21 06:47 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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509 |
by xuezhi Wed, 2023-02-15 14:00 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,554 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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852 |
by cryosky Sun, 2021-09-26 13:24 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,610 |
by IgaK Mon, 2014-04-21 06:47 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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545 |
by NingNing Tue, 2022-08-09 17:36 |
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Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
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331 |
by mluengo Mon, 2023-12-11 03:13 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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1,134 |
by matteoferla Fri, 2021-02-26 07:12 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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657 |
by Robertofg Tue, 2022-11-22 00:34 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,343 |
by Jhreed Fri, 2016-07-08 13:44 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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723 |
by lsong2 Thu, 2021-11-18 10:31 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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947 |
by matteoferla Wed, 2020-07-22 03:08 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,360 |
by matteoferla Fri, 2020-04-10 02:40 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,446 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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749 |
by hanzhiz Thu, 2021-12-16 09:32 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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1,073 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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961 |
by nferruz Fri, 2020-08-28 06:05 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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649 |
by almeida85 Mon, 2022-09-19 07:22 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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946 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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410 |
by JasonIsaac Sat, 2023-06-17 00:20 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
1 |
523 |
by rmoretti Wed, 2023-08-23 08:26 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,649 |
by rmoretti Mon, 2014-04-21 06:47 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,261 |
by rmoretti Mon, 2014-04-21 06:48 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
2,139 |
by nawsad Wed, 2014-06-25 13:26 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
1 |
2,288 |
by rmoretti Wed, 2015-09-02 12:48 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,816 |
by smlewis Wed, 2016-08-24 07:23 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
1,459 |
by matteoferla Wed, 2020-01-01 04:30 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
1 |
1,166 |
by rmoretti Tue, 2021-02-09 10:29 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
2,495 |
by smlewis Mon, 2014-04-21 06:47 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,986 |
by rmoretti Tue, 2016-07-12 08:40 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,717 |
by jeliazkov Tue, 2017-07-18 09:51 |
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Is it impossible to use the ddg_monomer function on a non-monomeric structure? by Wexter300 » Sat, 2024-05-25 14:16 |
1 |
111 |
by rmoretti Thu, 2024-06-20 13:24 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
1 |
2,366 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
1 |
3,083 |
by smlewis Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
1 |
2,770 |
by smlewis Mon, 2014-04-21 06:47 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,480 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
1 |
3,170 |
by smlewis Mon, 2014-04-21 06:47 |