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Rosetta 3 - General
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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1,855 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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605 |
by He Xiao Mon, 2022-11-07 04:10 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
2 |
1,003 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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612 |
by biotech Wed, 2022-10-26 11:17 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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565 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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1,254 |
by rmoretti Thu, 2022-09-29 00:15 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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1,251 |
by mb0261 Mon, 2022-09-26 07:50 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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650 |
by almeida85 Mon, 2022-09-19 07:22 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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569 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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780 |
by rmoretti Wed, 2022-09-14 09:14 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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1,270 |
by rmoretti Mon, 2022-09-12 07:01 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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904 |
by rmoretti Mon, 2022-09-12 06:58 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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577 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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784 |
by rmoretti Wed, 2022-09-07 09:19 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
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816 |
by rmoretti Tue, 2022-09-06 08:22 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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921 |
by rmoretti Tue, 2022-09-06 08:13 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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1,007 |
by aneeqh Fri, 2022-09-02 13:36 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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605 |
by ialvy Tue, 2022-08-30 00:00 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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829 |
by rmoretti Fri, 2022-08-26 14:51 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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1,140 |
by Ken Wed, 2022-08-17 08:04 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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642 |
by csvajda Sat, 2022-08-13 08:08 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
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807 |
by almeida85 Fri, 2022-08-12 05:56 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
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1,185 |
by almeida85 Thu, 2022-08-11 00:32 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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1,595 |
by almeida85 Thu, 2022-08-11 00:29 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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546 |
by NingNing Tue, 2022-08-09 17:36 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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589 |
by liuwenxi Tue, 2022-08-09 08:33 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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1,117 |
by rmoretti Tue, 2022-08-09 06:52 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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544 |
by mrosam Mon, 2022-08-08 01:37 |
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Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
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1,085 |
by jgustat Thu, 2022-07-28 10:00 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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942 |
by matteoferla Wed, 2022-07-20 10:33 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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1,370 |
by rmoretti Mon, 2022-07-18 11:56 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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605 |
by Karthik Wed, 2022-07-13 23:45 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
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1,691 |
by ssrb Tue, 2022-07-05 11:07 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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1,371 |
by sia Tue, 2022-07-05 05:47 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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2,315 |
by matteoferla Fri, 2022-07-01 13:49 |
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Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
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1,124 |
by jgustat Fri, 2022-07-01 13:26 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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1,079 |
by csvajda Thu, 2022-06-30 16:26 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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578 |
by mb0261 Thu, 2022-06-30 10:48 |
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Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
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909 |
by rmoretti Tue, 2022-06-28 11:06 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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2,434 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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595 |
by aastha.pal Mon, 2022-06-27 09:34 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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775 |
by guowuchen Thu, 2022-06-23 04:43 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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1,089 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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820 |
by matteoferla Fri, 2022-06-17 10:38 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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553 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
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824 |
by matteoferla Thu, 2022-06-09 14:41 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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1,067 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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1,237 |
by asbelx Mon, 2022-06-06 23:15 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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992 |
by matteoferla Fri, 2022-06-03 01:09 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
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1,186 |
by Anne Klein Tue, 2022-05-24 21:38 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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841 |
by ajasja Mon, 2022-05-23 07:19 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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1,366 |
by e3lm Fri, 2022-05-06 16:10 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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700 |
by rlwoltz Fri, 2022-04-29 15:15 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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599 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
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1,755 |
by protein_fan Fri, 2022-04-15 17:41 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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878 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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2,012 |
by rmoretti Thu, 2022-04-07 07:51 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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1,330 |
by rjacak Thu, 2022-03-31 10:53 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
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1,964 |
by guowuchen Wed, 2022-03-30 04:20 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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551 |
by Hyun Tue, 2022-03-29 19:53 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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591 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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1,234 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
2 |
1,249 |
by LanMei Tue, 2022-03-22 20:45 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
2,782 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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1,775 |
by csvajda Mon, 2022-03-07 07:46 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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961 |
by vmulligan Thu, 2022-03-03 18:48 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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1,176 |
by rmoretti Fri, 2022-02-18 11:14 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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1,023 |
by jadolfbr Sat, 2022-02-12 23:16 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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3,127 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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2,451 |
by CameronJA Wed, 2022-01-19 20:50 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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814 |
by Soler Sat, 2022-01-15 22:09 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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1,983 |
by matteoferla Mon, 2022-01-10 06:44 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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684 |
by tlopes Wed, 2022-01-05 18:19 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
0 |
750 |
by hanzhiz Thu, 2021-12-16 09:32 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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717 |
by hanzhiz Thu, 2021-12-16 09:18 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
0 |
805 |
by tisozaki Tue, 2021-12-14 17:16 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
1,163 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
1 |
1,133 |
by rmoretti Tue, 2021-11-30 07:41 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,746 |
by diasmarieli Fri, 2021-11-26 05:11 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
2 |
1,432 |
by hong wei Thu, 2021-11-25 02:46 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
813 |
by Soler Sat, 2021-11-20 23:41 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
0 |
724 |
by lsong2 Thu, 2021-11-18 10:31 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
1 |
1,004 |
by ajasja Thu, 2021-11-18 00:33 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
1 |
1,148 |
by gezmi Sat, 2021-11-06 15:26 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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739 |
by Wenithor Sat, 2021-10-09 07:23 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
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2,277 |
by matteoferla Thu, 2021-10-07 09:31 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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1,689 |
by amystevens Thu, 2021-09-30 14:18 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
5 |
4,928 |
by matteoferla Wed, 2021-09-29 01:58 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
0 |
853 |
by cryosky Sun, 2021-09-26 13:24 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
2 |
1,435 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
2,297 |
by matteoferla Mon, 2021-09-20 06:05 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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1,335 |
by cryosky Fri, 2021-09-17 22:04 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
11 |
11,886 |
by G Mustafa Fri, 2021-09-10 08:20 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
7,642 |
by G Mustafa Fri, 2021-09-10 01:16 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
1 |
1,208 |
by asbelx Wed, 2021-09-08 23:19 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
1,559 |
by matteoferla Thu, 2021-09-02 03:50 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
2 |
1,591 |
by patcD Wed, 2021-09-01 06:54 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
2,021 |
by matteoferla Fri, 2021-08-20 08:37 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
0 |
856 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
1,214 |
by matteoferla Mon, 2021-08-09 01:53 |