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Rosetta 3 - General
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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2,505 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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3,157 |
by rmoretti Mon, 2014-04-21 06:48 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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1,398 |
by rmoretti Tue, 2021-04-13 06:42 |
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Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
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908 |
by rmoretti Tue, 2022-06-28 11:06 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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2,109 |
by nawsad Fri, 2014-06-20 03:00 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
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2,073 |
by rmoretti Thu, 2015-08-06 09:28 |
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"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
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2,347 |
by smlewis Thu, 2016-08-11 13:16 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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2,102 |
by jadolfbr Wed, 2017-11-01 10:11 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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1,175 |
by rmoretti Fri, 2022-02-18 11:14 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,783 |
by smlewis Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
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2,321 |
by smlewis Mon, 2014-04-21 06:47 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
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2,120 |
by rmoretti Mon, 2014-04-21 06:47 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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2,199 |
by rmoretti Thu, 2018-06-28 14:28 |
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How do I implement more CPU cores in the execution of FlexPepDock? by ChoripanSalado » Thu, 2024-05-02 08:55 |
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207 |
by rmoretti Thu, 2024-06-20 13:34 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
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2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,173 |
by smlewis Mon, 2014-04-21 06:47 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,635 |
by rmoretti Mon, 2014-04-21 06:48 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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2,133 |
by vmulligan Tue, 2019-03-26 11:30 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,506 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,425 |
by rmoretti Mon, 2014-04-21 06:47 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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2,205 |
by rmoretti Tue, 2014-11-04 10:35 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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2,045 |
by rmoretti Sat, 2015-09-19 13:20 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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2,345 |
by smlewis Mon, 2014-04-21 06:48 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
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2,162 |
by rmoretti Tue, 2016-07-12 08:36 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,882 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,554 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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2,066 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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4,032 |
by rmoretti Fri, 2014-05-23 08:09 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,911 |
by rmoretti Fri, 2015-07-03 12:58 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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2,245 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
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2,451 |
by smlewis Mon, 2014-04-21 06:47 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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2,072 |
by smlewis Sun, 2016-03-13 15:25 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
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1,753 |
by rmoretti Tue, 2017-03-28 09:02 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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1,190 |
by taylorjones Wed, 2021-06-09 16:30 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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2,056 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,412 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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655 |
by ajasja Wed, 2023-04-05 00:20 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,279 |
by smlewis Mon, 2014-04-21 06:47 |
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Illegal attempt to score with non-identical atom set between pose and etable by ng98 » Fri, 2024-06-07 03:22 |
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126 |
by rmoretti Tue, 2024-06-11 02:45 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,597 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,457 |
by rmoretti Tue, 2021-02-09 12:35 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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2,299 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
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3,123 |
by Anonymous Mon, 2014-04-21 06:47 |
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segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
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2,290 |
by yarovoy Wed, 2016-03-30 12:37 |
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build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
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2,071 |
by smlewis Mon, 2014-04-21 06:47 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
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4,797 |
by smlewis Mon, 2014-04-21 06:47 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
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2,313 |
by smlewis Mon, 2014-04-21 06:47 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,836 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
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2,281 |
by smlewis Mon, 2014-04-21 06:47 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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3,431 |
by rmoretti Thu, 2015-12-03 15:14 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
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1,739 |
by jadolfbr Fri, 2018-11-09 09:17 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,519 |
by rmoretti Wed, 2020-04-01 10:10 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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991 |
by matteoferla Fri, 2022-06-03 01:09 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,336 |
by smlewis Mon, 2014-04-21 06:47 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
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2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
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2,481 |
by rmoretti Fri, 2015-07-03 13:04 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,443 |
by rmoretti Mon, 2019-11-04 12:54 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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1,506 |
by rmoretti Tue, 2021-02-09 12:02 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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704 |
by rmoretti Mon, 2023-02-06 14:35 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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2,865 |
by smlewis Mon, 2014-04-21 06:47 |
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Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
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2,594 |
by smlewis Mon, 2014-04-21 06:47 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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3,406 |
by franfdez Mon, 2014-04-21 06:47 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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1,559 |
by smlewis Fri, 2019-06-28 13:56 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
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1,213 |
by matteoferla Mon, 2021-08-09 01:53 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
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2,366 |
by smlewis Mon, 2014-04-21 06:47 |
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Scripts and/or strategies for saturation mutagenesis simulations? by drinker615 » Tue, 2024-04-16 18:43 |
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198 |
by rmoretti Thu, 2024-06-20 13:39 |
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Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
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3,014 |
by reddybg Mon, 2014-04-21 06:47 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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1,877 |
by rmoretti Mon, 2018-02-05 15:44 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
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1,647 |
by AJVincelli Sun, 2018-11-25 11:09 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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2,534 |
by smlewis Fri, 2014-11-07 12:03 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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2,096 |
by nannemdp Tue, 2020-05-26 06:33 |
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Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
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2,355 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
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5,148 |
by rmoretti Mon, 2017-11-06 07:36 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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1,710 |
by smlewis Tue, 2018-08-07 16:59 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
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1,581 |
by brownbp1 Tue, 2021-02-09 12:12 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
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3,995 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
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2,233 |
by rmoretti Tue, 2016-07-12 08:43 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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1,500 |
by rmoretti Mon, 2019-08-26 14:52 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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1,207 |
by asbelx Wed, 2021-09-08 23:19 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
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2,480 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about blueprint file generation by ng98 » Fri, 2024-05-24 03:02 |
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90 |
by rmoretti Thu, 2024-06-20 13:25 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
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2,497 |
by smlewis Mon, 2014-04-21 06:47 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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2,193 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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3,579 |
by rmoretti Wed, 2014-12-03 18:52 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
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2,312 |
by smlewis Mon, 2018-03-12 09:57 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
1,584 |
by rmoretti Wed, 2019-04-03 10:03 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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1,325 |
by windmill Thu, 2020-06-18 21:32 |
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Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
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2,381 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
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2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
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2,447 |
by rmoretti Mon, 2014-07-07 08:08 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
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1,927 |
by rmoretti Thu, 2016-09-08 07:56 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
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1,945 |
by rmoretti Sat, 2017-12-02 10:22 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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1,645 |
by dfcoelho Tue, 2020-02-04 07:45 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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1,788 |
by rmoretti Wed, 2021-02-03 14:45 |
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Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
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760 |
by rmoretti Fri, 2023-02-24 13:58 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
4,011 |
by smlewis Mon, 2014-04-21 06:47 |