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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48 		1
 3,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34 		4
 4,364 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07 		1
 2,533 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25 		4
 6,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53 		1
 2,983 by smlewis
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23 		4
 5,536 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14 		4
 6,548 by Lindsay
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50 		30
 28,878 by smlewis
Mon, 2014-04-21 06:47
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58 		7
 10,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20 		2
 3,270 by doranhen
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39 		3
 5,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39 		14
 12,061 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56 		6
 6,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic hydrophobicity patch
by Lindsay » Fri, 2012-05-04 08:24 		7
 9,480 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05 		9
 9,525 by arthuc01
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15 		3
 4,093 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32 		1
 2,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56 		3
 3,558 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31 		10
 9,519 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31 		1
 2,845 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02 		6
 5,895 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04 		4
 5,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23 		3
 4,436 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38 		1
 2,247 by frichter
Mon, 2014-04-21 06:47
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56 		9
 9,764 by Lindsay
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13 		6
 6,237 by Anonymous
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46 		1
 2,817 by smlewis
Mon, 2014-04-21 06:47
Hot topic how to make benchmark?
by albumns » Wed, 2012-04-04 05:23 		23
 30,825 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21 		1
 2,313 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37 		4
 5,774 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01 		2
 2,931 by doranhen
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22 		1
 3,647 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20 		1
 3,632 by rmoretti
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23 		0
 1,774 by DanielK
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57 		7
 6,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49 		1
 2,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46 		3
 5,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34 		6
 6,805 by doranhen
Mon, 2014-04-21 06:47
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48 		2
 9,980 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19 		2
 4,054 by rmoretti
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21 		0
 1,508 by DanielK
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19 		3
 3,815 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19 		3
 3,908 by gipsonb
Mon, 2014-04-21 06:47
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51 		2
 3,107 by Lindsay
Mon, 2014-04-21 06:47
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40 		7
 6,549 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11 		1
 2,487 by Anonymous
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21 		0
 1,668 by DanielK
Mon, 2014-04-21 06:47
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49 		6
 11,769 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35 		2
 3,006 by rmoretti
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23 		2
 3,065 by DanielK
Mon, 2014-04-21 06:47
Hot topic Fix back bone design fixbb
by Lindsay » Tue, 2012-03-06 12:30 		26
 23,521 by Anonymous
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05 		2
 2,971 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04 		1
 2,311 by rmoretti
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24 		9
 8,552 by albumns
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58 		1
 2,299 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58 		1
 4,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50 		1
 2,499 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50 		5
 6,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03 		1
 2,256 by albumns
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39 		2
 3,107 by aroop
Mon, 2014-04-21 06:47
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23 		2
 3,147 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47 		4
 5,943 by arthuc01
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38 		4
 5,699 by albumns
Mon, 2014-04-21 06:47
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34 		3
 3,704 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57 		10
 8,425 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19 		1
 2,739 by mpacella
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14 		4
 4,485 by mdyini
Mon, 2014-04-21 06:47
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00 		4
 4,649 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35 		5
 9,041 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06 		3
 4,390 by smlewis
Mon, 2014-04-21 06:47
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16 		5
 5,295 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05 		3
 4,093 by franfdez
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55 		4
 4,338 by pardave
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39 		1
 3,406 by franfdez
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34 		19
 16,950 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28 		2
 2,612 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18 		1
 2,614 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57 		2
 2,875 by smlewis
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11 		4
 4,497 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33 		7
 8,215 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41 		1
 3,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21 		4
 4,753 by renedominik
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31 		2
 2,835 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10 		10
 9,634 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32 		1
 5,607 by smlewis
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17 		3
 3,919 by alejandro
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06 		1
 2,761 by smlewis
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45 		2
 3,178 by wangyr
Mon, 2014-04-21 06:47
Normal topic How does one prevent Rosetta from connecting two separate chains?
by jhbrown » Thu, 2011-12-15 14:08 		7
 7,152 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01 		6
 6,395 by Anonymous
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49 		1
 2,505 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24 		35
 33,290 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20 		9
 8,956 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39 		2
 3,080 by jhbrown
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23 		1
 2,497 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44 		4
 4,544 by justin
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19 		2
 3,221 by alejandro
Mon, 2014-04-21 06:47
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45 		10
 10,337 by brspurri
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53 		1
 2,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15 		2
 3,335 by zhisheng
Mon, 2014-04-21 06:47