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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01 		6
 6,401 by jurkm
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23 		3
 3,286 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07 		1
 2,382 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17 		0
 556 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21 		4
 4,817 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12 		1
 1,642 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51 		5
 2,320 by matteoferla
Fri, 2022-07-01 13:49
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33 		2
 3,212 by molon
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03 		1
 2,075 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16 		1
 2,256 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26 		2
 3,394 by jklett
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04 		4
 6,247 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40 		9
 9,312 by ac.research
Mon, 2018-05-14 10:20
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45 		1
 2,557 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52 		8
 5,519 by helenah
Tue, 2020-11-03 04:33
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11 		5
 4,636 by Loki01
Thu, 2017-12-14 06:20
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33 		0
 589 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37 		1
 1,571 by connyyu
Thu, 2019-04-18 03:26
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30 		3
 4,224 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51 		1
 2,234 by rmoretti
Tue, 2016-07-12 08:43
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55 		26
 30,310 by omirus
Mon, 2014-04-21 06:48
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05 		5
 5,616 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30 		1
 1,796 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27 		3
 2,828 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41 		0
 577 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43 		0
 775 by guowuchen
Thu, 2022-06-23 04:43
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10 		5
 6,072 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33 		1
 1,460 by rmoretti
Tue, 2021-02-09 12:25
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41 		33
 35,440 by jyy
Wed, 2019-02-20 00:30
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57 		2
 2,420 by ac.research
Fri, 2017-08-18 00:53
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 		51
 62,263 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30 		3
 4,308 by rmoretti
Mon, 2014-04-21 06:48
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18 		16
 16,252 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27 		1
 2,098 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07 		4
 3,549 by smlewis
Mon, 2018-12-31 08:58
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53 		0
 551 by Hyun
Tue, 2022-03-29 19:53
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25 		4
 6,059 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44 		2
 2,098 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31 		1
 2,735 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protein docking
by LUOD » Thu, 2023-11-02 18:23 		0
 317 by LUOD
Thu, 2023-11-02 18:25
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19 		1
 2,740 by mpacella
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30 		5
 5,051 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22 		5
 6,265 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50 		6
 5,753 by weallen
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33 		2
 3,109 by phanvy
Sun, 2014-06-22 23:29
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25 		0
 1,554 by exchhattu
Mon, 2014-04-21 06:47
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03 		3
 1,986 by matteoferla
Mon, 2022-01-10 06:44
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03 		1
 2,257 by albumns
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57 		3
 4,024 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about blueprint file generation
by ng98 » Fri, 2024-05-24 03:02 		1
 92 by rmoretti
Thu, 2024-06-20 13:25
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07 		2
 2,204 by orionshih
Tue, 2018-05-01 21:16
Normal topic Question about computer specifications requirement of RFdiffusion
by ng98 » Mon, 2024-05-06 02:18 		1
 302 by nannemdp
Mon, 2024-05-06 20:09
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39 		1
 1,798 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44 		3
 3,838 by smlewis
Mon, 2016-08-22 10:28
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19 		1
 2,291 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51 		0
 599 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46 		3
 3,674 by phanvy
Wed, 2014-07-02 23:32
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28 		2
 3,427 by rmoretti
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47 		1
 2,343 by rmoretti
Mon, 2014-06-09 10:05
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26 		1
 2,448 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17 		7
 7,079 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43 		5
 6,747 by qlj
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04 		4
 5,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09 		5
 5,540 by zeynep
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13 		0
 1,099 by LTJ
Mon, 2020-07-06 14:13
Normal topic Questions about gen_apo_grids
by JasonIsaac » Sat, 2023-06-17 00:20 		0
 410 by JasonIsaac
Sat, 2023-06-17 00:20
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39 		3
 5,766 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34 		3
 4,662 by dgront
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26 		2
 2,838 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24 		1
 1,663 by smlewis
Thu, 2018-06-28 13:34
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45 		0
 859 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45 		2
 4,459 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25 		2
 3,002 by SergeyP
Sun, 2015-12-20 01:44
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24 		1
 3,432 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45 		4
 4,865 by pardave
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08 		2
 2,995 by Lati
Tue, 2016-01-12 13:28
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26 		1
 2,207 by Lati
Fri, 2015-11-20 03:32
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54 		1
 2,411 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44 		1
 3,408 by smlewis
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34 		19
 16,951 by smlewis
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24 		35
 33,291 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44 		9
 9,379 by rmoretti
Mon, 2015-06-01 15:27
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 		55
 56,931 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06 		1
 2,481 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29 		2
 2,529 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10 		5
 6,613 by rmoretti
Mon, 2014-04-21 06:47
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02 		0
 1,387 by hajar
Wed, 2020-06-10 11:17
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13 		1
 2,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53 		1
 1,418 by aloshbau
Tue, 2021-03-09 02:47
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57 		2
 2,170 by rmoretti
Mon, 2018-08-20 11:51
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23 		2
 3,148 by Lindsay
Mon, 2014-04-21 06:47
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04 		2
 2,279 by matteoferla
Thu, 2021-10-07 09:31
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44 		3
 2,972 by smlewis
Wed, 2018-04-18 19:03
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01 		3
 3,219 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48 		5
 5,880 by rmoretti
Sat, 2015-04-25 10:05
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54 		2
 3,101 by mintseris
Mon, 2014-04-21 06:47
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25 		3
 3,435 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04 		1
 1,649 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00 		4
 4,650 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01 		5
 5,184 by smlewis
Mon, 2014-04-21 06:47