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Rosetta 3 - General
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Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
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2,474 |
by wlzhang Sun, 2014-04-20 18:17 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
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2,012 |
by ssrb Tue, 2016-07-12 10:02 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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1,491 |
by rmoretti Tue, 2020-10-13 11:40 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
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2,499 |
by smlewis Mon, 2014-04-21 06:47 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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2,342 |
by rmoretti Mon, 2014-06-09 10:05 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
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3,279 |
by rmoretti Fri, 2015-07-03 13:24 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,457 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
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3,013 |
by IAndre Mon, 2014-04-21 06:47 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
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4,276 |
by rmoretti Tue, 2018-04-10 16:00 |
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[Question] How do the <FILTERS> confidence work? by jrom » Wed, 2024-01-24 10:25 |
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353 |
by rmoretti Wed, 2024-01-24 11:55 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
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3,114 |
by rmoretti Wed, 2014-09-17 10:06 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
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2,460 |
by rmoretti Fri, 2016-10-14 16:43 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,772 |
by jyy Mon, 2020-01-13 17:19 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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2,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
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2,317 |
by smlewis Mon, 2014-04-21 06:47 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
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1,876 |
by rmoretti Fri, 2017-09-08 15:15 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,617 |
by smlewis Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,622 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,963 |
by rmoretti Tue, 2019-07-09 12:31 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,469 |
by matteoferla Fri, 2020-07-24 03:06 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,515 |
by smlewis Mon, 2014-04-21 06:47 |
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max_nn by anusmita_sahoo » Thu, 2010-03-11 02:21 |
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2,090 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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3,141 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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2,226 |
by smlewis Mon, 2014-04-21 06:47 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
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1,792 |
by rmoretti Tue, 2018-01-30 08:29 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,606 |
by rmoretti Thu, 2016-04-28 16:25 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,785 |
by rmoretti Mon, 2018-02-12 09:39 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,463 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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5,668 |
by yuvals Sat, 2014-06-21 02:17 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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1,436 |
by rmoretti Tue, 2021-02-09 11:30 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
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2,614 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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3,311 |
by smlewis Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
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2,935 |
by smlewis Mon, 2014-04-21 06:47 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
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2,503 |
by jadolfbr Fri, 2015-02-27 11:08 |
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question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
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2,290 |
by smlewis Mon, 2014-04-21 06:47 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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2,416 |
by rmoretti Sat, 2018-03-17 10:43 |
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new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
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2,012 |
by smlewis Mon, 2014-04-21 06:47 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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2,088 |
by rmoretti Tue, 2014-07-01 12:07 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
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1,888 |
by possu Tue, 2016-08-30 16:57 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
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3,576 |
by smlewis Sun, 2017-11-19 20:08 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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1,697 |
by rmoretti Tue, 2021-02-09 09:37 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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4,621 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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1,334 |
by cryosky Fri, 2021-09-17 22:04 |
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scoring function changed from 2.3? by jarod » Mon, 2010-04-12 18:56 |
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2,051 |
by smlewis Mon, 2014-04-21 06:47 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
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2,256 |
by albumns Mon, 2014-04-21 06:47 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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2,219 |
by rmoretti Wed, 2015-06-17 12:43 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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3,101 |
by rmoretti Mon, 2017-08-28 09:32 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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1,661 |
by smlewis Thu, 2018-06-28 13:34 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,608 |
by londonir Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
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2,845 |
by smlewis Mon, 2014-04-21 06:47 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,733 |
by rmoretti Mon, 2018-03-19 09:08 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,636 |
by vmulligan Mon, 2019-04-08 14:49 |
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RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
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2,206 |
by Lati Fri, 2015-11-20 03:32 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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2,011 |
by rmoretti Thu, 2022-04-07 07:51 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
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725 |
by rmoretti Thu, 2023-03-16 11:46 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
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2,010 |
by smlewis Mon, 2014-04-21 06:47 |
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energy_based_clustering and silentfile option by weiw26 » Wed, 2024-06-05 16:28 |
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113 |
by rmoretti Thu, 2024-06-06 08:11 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,679 |
by danpf Tue, 2019-09-03 10:39 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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1,003 |
by ajasja Thu, 2021-11-18 00:33 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,712 |
by rmoretti Mon, 2014-06-16 08:23 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,361 |
by libai2098 Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,557 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
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2,697 |
by rmoretti Tue, 2014-02-11 06:24 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
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2,337 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,499 |
by rmoretti Tue, 2019-07-09 15:59 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
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815 |
by rmoretti Tue, 2022-09-06 08:22 |
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Global Docking with output analysis RMS by kwu030 » Fri, 2024-02-23 09:17 |
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377 |
by rmoretti Mon, 2024-02-26 08:24 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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3,407 |
by smlewis Mon, 2014-04-21 06:47 |
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Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
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2,156 |
by rmoretti Mon, 2016-11-14 15:12 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,429 |
by matteoferla Tue, 2020-04-14 03:36 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
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2,357 |
by smlewis Mon, 2014-04-21 06:47 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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2,047 |
by rmoretti Fri, 2020-11-13 12:58 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,963 |
by rmoretti Thu, 2016-04-28 14:47 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
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1,287 |
by rmoretti Wed, 2021-07-14 07:07 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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779 |
by rmoretti Wed, 2022-09-14 09:14 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
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2,734 |
by smlewis Mon, 2014-04-21 06:47 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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2,067 |
by smlewis Tue, 2015-12-22 08:31 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
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2,421 |
by rmoretti Wed, 2018-01-31 14:57 |
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Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
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2,380 |
by smlewis Mon, 2014-04-21 06:47 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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2,213 |
by rmoretti Tue, 2014-11-11 13:22 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
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2,508 |
by smlewis Sun, 2016-01-24 03:24 |
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Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
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1,930 |
by rmoretti Thu, 2017-02-02 08:52 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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1,602 |
by vmulligan Wed, 2021-04-28 14:20 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
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3,914 |
by rmoretti Mon, 2014-04-21 06:48 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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2,269 |
by nawsad Fri, 2014-06-20 02:48 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
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1,944 |
by smlewis Mon, 2016-08-22 10:39 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
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2,623 |
by denatured Fri, 2019-12-13 11:19 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,297 |
by rmoretti Wed, 2021-01-20 07:39 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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960 |
by vmulligan Thu, 2022-03-03 18:48 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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2,223 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
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3,463 |
by smlewis Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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3,306 |
by smlewis Mon, 2014-04-21 06:47 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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2,155 |
by rmoretti Mon, 2015-03-30 16:38 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
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2,431 |
by rmoretti Tue, 2016-07-12 08:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,683 |
by rmoretti Thu, 2018-06-28 14:22 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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1,642 |
by rmoretti Mon, 2019-08-26 15:00 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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1,620 |
by rmoretti Tue, 2021-02-09 13:44 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
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1,557 |
by matteoferla Thu, 2021-09-02 03:50 |
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Error about rifdocking step 19 motifgraft mover by ng98 » Wed, 2024-05-22 02:25 |
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150 |
by rmoretti Wed, 2024-05-22 08:07 |
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problems in building rosetta3.1 (solved) by zpliu09 » Wed, 2010-03-31 02:03 |
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2,074 |
by smlewis Mon, 2014-04-21 06:47 |