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Rosetta 3 - General
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
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2,413 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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639 |
by almeida85 Thu, 2022-11-17 01:04 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,783 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,808 |
by matteoferla Sat, 2020-05-23 03:09 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
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1,993 |
by jalan Thu, 2020-04-23 05:19 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,552 |
by sayan500 Tue, 2019-07-30 22:20 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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2,047 |
by rmoretti Fri, 2020-11-13 12:58 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,443 |
by rmoretti Mon, 2019-11-04 12:54 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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478 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
2 |
2,026 |
by Alvin Yang Wed, 2023-10-04 03:34 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,772 |
by jyy Mon, 2020-01-13 17:19 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,639 |
by rmoretti Mon, 2014-04-21 06:47 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,992 |
by rmoretti Sat, 2017-12-16 12:19 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,963 |
by rmoretti Thu, 2016-04-28 14:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
10 |
9,634 |
by smlewis Mon, 2014-04-21 06:47 |
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Error about using BuildDeNovoBackboneMover by ng98 » Wed, 2024-05-29 01:47 |
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138 |
by rmoretti Thu, 2024-06-20 13:22 |
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Error about rifdocking step 19 motifgraft mover by ng98 » Wed, 2024-05-22 02:25 |
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150 |
by rmoretti Wed, 2024-05-22 08:07 |
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Error about rifdocking by ng98 » Mon, 2024-01-08 16:21 |
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403 |
by rmoretti Tue, 2024-01-09 23:41 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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11,522 |
by smlewis Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,812 |
by phanvy Wed, 2014-10-08 01:42 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
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2,390 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
4,053 |
by abiadak Mon, 2014-04-21 06:47 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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1,436 |
by rmoretti Tue, 2021-02-09 11:30 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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852 |
by cryosky Sun, 2021-09-26 13:24 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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799 |
by rohi Fri, 2021-06-25 10:29 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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6,291 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
4,433 |
by bo Mon, 2014-04-21 06:47 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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1,164 |
by bazzoli Wed, 2018-10-10 01:59 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
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1,990 |
by rmoretti Wed, 2016-06-15 16:06 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
1 |
2,500 |
by smlewis Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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590 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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1,250 |
by mb0261 Mon, 2022-09-26 07:50 |
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energy_based_clustering and silentfile option by weiw26 » Wed, 2024-06-05 16:28 |
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113 |
by rmoretti Thu, 2024-06-06 08:11 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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2,776 |
by gipsonb Mon, 2014-04-21 06:47 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,836 |
by smlewis Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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11,118 |
by lanselibai Wed, 2014-10-15 01:41 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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4,032 |
by rmoretti Fri, 2014-05-23 08:09 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
11,769 |
by rmoretti Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
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7,528 |
by Filipe Mon, 2014-04-21 06:47 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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6,065 |
by linucks Wed, 2018-04-25 08:50 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,768 |
by smlewis Tue, 2018-07-03 11:22 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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5,295 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,667 |
by rmoretti Mon, 2014-04-21 06:48 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
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3,107 |
by Lindsay Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,895 |
by Anonymous Mon, 2014-04-21 06:47 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,932 |
by rmoretti Mon, 2016-11-14 14:21 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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2,210 |
by smlewis Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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10,075 |
by rmoretti Thu, 2017-02-02 08:32 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
3,187 |
by Lindsay Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
5,595 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,384 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
4,558 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
2,413 |
by ylwang Sat, 2019-11-23 06:26 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
5,337 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
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2,307 |
by smlewis Mon, 2014-04-21 06:47 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
2 |
2,997 |
by qlj Thu, 2014-03-06 22:20 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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951 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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2,299 |
by smlewis Mon, 2014-04-21 06:47 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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4,976 |
by lanselibai Tue, 2014-12-16 10:48 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
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3,107 |
by aroop Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,294 |
by smlewis Mon, 2014-04-21 06:47 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,735 |
by brspurri Thu, 2020-08-20 13:22 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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2,120 |
by rmoretti Thu, 2015-04-30 07:13 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
5 |
5,350 |
by salvatta Mon, 2018-09-10 10:04 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,822 |
by aaj Mon, 2016-02-22 07:50 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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1,022 |
by jadolfbr Sat, 2022-02-12 23:16 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
1,240 |
by fgomes Fri, 2019-11-22 19:12 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,755 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,800 |
by rmoretti Wed, 2017-09-06 08:47 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
2 |
3,249 |
by khanhbinh Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
9,041 |
by xpzhang Mon, 2014-04-21 06:47 |
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Docking antibody to membrane protein by Yegor_Ko » Thu, 2023-10-12 07:37 |
2 |
693 |
by Yegor_Ko Fri, 2023-10-20 01:35 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
12 |
14,782 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
15 |
13,905 |
by saxen Mon, 2014-04-21 06:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
1,683 |
by rmoretti Thu, 2018-06-28 14:22 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,752 |
by einew Mon, 2014-04-21 06:47 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
7 |
8,735 |
by rmoretti Wed, 2015-01-21 08:43 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,380 |
by rmoretti Mon, 2016-09-05 09:39 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
2 |
2,389 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
4,013 |
by frits Mon, 2014-04-21 06:48 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
1 |
2,067 |
by smlewis Tue, 2015-12-22 08:31 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
1,267 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
3,321 |
by pledor Mon, 2014-04-21 06:47 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
10 |
13,474 |
by lanselibai Tue, 2015-02-10 14:03 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,575 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,539 |
by tricia Mon, 2014-04-21 06:47 |
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Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score by mrosam » Fri, 2024-04-19 07:57 |
1 |
206 |
by rmoretti Thu, 2024-06-20 13:38 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,536 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,944 |
by smlewis Mon, 2016-08-22 10:39 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,754 |
by protein_fan Fri, 2022-04-15 17:41 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,812 |
by smlewis Sun, 2017-01-15 18:10 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
2 |
712 |
by ivareve125 Mon, 2023-07-17 17:37 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
2 |
1,065 |
by brubin Tue, 2022-12-20 13:26 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
2 |
1,386 |
by ericlang Mon, 2021-07-05 06:59 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
4,544 |
by justin Mon, 2014-04-21 06:47 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
1,205 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
1 |
4,885 |
by rmoretti Sat, 2014-03-22 11:40 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,440 |
by jyotisutar9 Wed, 2016-12-14 09:39 |