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Topic / Topic starter Repliessort descending Views Last post
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44 		9
 11,598 by tianbu
Mon, 2014-02-17 03:36
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40 		9
 9,303 by ac.research
Mon, 2018-05-14 10:20
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05 		9
 9,535 by arthuc01
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09 		9
 11,119 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44 		9
 9,379 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56 		9
 9,764 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57 		10
 8,425 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40 		10
 11,250 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39 		10
 11,567 by jurkm
Mon, 2014-04-21 06:47
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26 		10
 13,475 by lanselibai
Tue, 2015-02-10 14:03
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27 		10
 8,668 by smlewis
Tue, 2018-06-19 09:28
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39 		10
 10,076 by rmoretti
Thu, 2017-02-02 08:32
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31 		10
 9,519 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45 		10
 10,348 by brspurri
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59 		10
 9,140 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40 		10
 9,634 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10 		10
 9,634 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25 		10
 11,692 by jurkm
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30 		11
 8,998 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11 		11
 11,886 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42 		11
 8,736 by smlewis
Tue, 2017-08-29 08:56
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13 		11
 9,864 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic How to obtain alignment file for comparative modeling under Rosetta 3.1?
by lennylv » Tue, 2010-05-25 01:29 		11
 17,860 by sabine
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36 		11
 6,504 by matteoferla
Sat, 2020-09-12 03:02
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04 		11
 13,030 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40 		11
 12,861 by smlewis
Mon, 2014-04-21 06:47
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15 		11
 19,109 by rmoretti
Mon, 2018-01-15 15:37
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55 		11
 8,495 by rohi
Sun, 2020-07-26 17:03
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00 		11
 12,817 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08 		11
 10,923 by rmoretti
Mon, 2014-04-21 06:47
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45 		11
 11,381 by weitzner
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00 		11
 10,643 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24 		11
 13,029 by Lindsay
Mon, 2014-04-21 06:48
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39 		12
 12,153 by matteoferla
Wed, 2021-07-14 04:03
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35 		12
 14,827 by Apiwat
Tue, 2014-03-11 09:42
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23 		12
 10,521 by smlewis
Thu, 2016-12-22 13:11
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49 		12
 14,794 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53 		12
 14,008 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50 		12
 12,726 by rmoretti
Fri, 2015-04-24 12:15
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11 		12
 11,493 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58 		12
 5,793 by kwu030
Thu, 2023-05-18 08:31
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42 		12
 9,819 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55 		13
 12,247 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15 		13
 13,033 by sabine
Mon, 2014-04-21 06:47
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20 		13
 11,092 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54 		13
 11,802 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14 		13
 11,305 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54 		13
 13,419 by ablakely7
Wed, 2019-09-11 15:33
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08 		13
 16,664 by rmoretti
Tue, 2014-11-11 13:56
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38 		13
 9,398 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic How to relax only one domain of a protein and keep the rest of them fixed
by tevang » Sun, 2011-04-10 03:16 		14
 14,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04 		14
 15,277 by phanvy
Wed, 2014-06-18 07:50
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39 		14
 12,061 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56 		14
 16,721 by jseco
Mon, 2021-03-08 03:46
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24 		15
 13,921 by saxen
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42 		15
 17,142 by tevang
Mon, 2014-04-21 06:47
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38 		15
 20,089 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36 		16
 14,594 by Basantab
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18 		16
 16,251 by rmoretti
Mon, 2014-04-21 06:47
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36 		17
 14,595 by albumns
Mon, 2014-04-21 06:47
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47 		17
 16,798 by smlewis
Tue, 2016-05-17 08:06
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49 		18
 16,303 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10 		18
 18,030 by aaj
Fri, 2016-04-22 15:20
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18 		18
 19,552 by jadolfbr
Wed, 2014-05-14 08:51
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08 		19
 20,722 by rmoretti
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34 		19
 16,950 by smlewis
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48 		19
 17,891 by pledor
Mon, 2014-04-21 06:47
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26 		21
 20,891 by rmoretti
Fri, 2015-12-18 14:26
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59 		21
 25,292 by rmoretti
Wed, 2015-02-18 09:23
Hot topic Is it possible to do alanine scanning in Rosetta 3.2.1.?
by monos_morpheus » Tue, 2011-04-12 02:36 		21
 22,633 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19 		22
 19,807 by Anonymous
Mon, 2014-04-21 06:47
Hot topic how to make benchmark?
by albumns » Wed, 2012-04-04 05:23 		23
 30,825 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39 		23
 19,860 by FrankVerdin86
Mon, 2014-04-21 06:47
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39 		25
 25,475 by Gaurav_kumar
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09 		25
 21,643 by smlewis
Tue, 2016-06-28 09:05
Hot topic Fix back bone design fixbb
by Lindsay » Tue, 2012-03-06 12:30 		26
 23,521 by Anonymous
Mon, 2014-04-21 06:47
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55 		26
 30,310 by omirus
Mon, 2014-04-21 06:48
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10 		26
 25,601 by rmoretti
Mon, 2014-04-21 06:47
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57 		28
 26,228 by Marsia
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50 		30
 28,879 by smlewis
Mon, 2014-04-21 06:47
Hot topic RNA Denovo RMSD data
by eremma » Thu, 2012-08-02 01:40 		31
 27,658 by eremma
Mon, 2014-04-21 06:47
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41 		33
 35,406 by jyy
Wed, 2019-02-20 00:30
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24 		35
 33,290 by rmoretti
Mon, 2014-04-21 06:47
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 		51
 62,263 by rmoretti
Fri, 2015-07-03 13:29
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 		55
 56,929 by bharat_46010
Mon, 2014-04-21 06:47

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