You are here
Rosetta 3 - General
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
2,143 |
by David Tue, 2019-01-22 12:23 |
|
|
Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
935 |
by ate Sat, 2021-05-01 02:22 |
|
|
How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
0 |
578 |
by mb0261 Thu, 2022-06-30 10:48 |
|
|
Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
0 |
612 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
|
|
Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,130 |
by burkheadlab Mon, 2014-04-21 06:47 |
|
|
running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,609 |
by tevang Mon, 2014-04-21 06:47 |
|
|
Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
0 |
817 |
by dkesar Fri, 2021-06-04 19:09 |
|
|
Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,285 |
by xujc Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,509 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
0 |
873 |
by whiteqiu Mon, 2021-03-01 18:32 |
|
|
rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
0 |
700 |
by rlwoltz Fri, 2022-04-29 15:15 |
|
|
TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
0 |
433 |
by chenna Sun, 2023-04-23 23:52 |
|
|
Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
0 |
739 |
by Wenithor Sat, 2021-10-09 07:23 |
|
|
Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
0 |
637 |
by Delfosse57 Thu, 2022-12-01 20:40 |
|
|
pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,554 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,597 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
|
|
Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
780 |
by Antonia Wed, 2021-06-16 12:30 |
|
|
Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
642 |
by csvajda Sat, 2022-08-13 08:08 |
|
|
enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
0 |
800 |
by rohi Fri, 2021-06-25 10:29 |
|
|
Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
0 |
577 |
by cttm4a1 Wed, 2022-09-07 23:41 |
|
|
JD3 FastRelax over MPI - crashes on relax completion/before writing output by aduffy33 » Tue, 2024-03-12 12:51 |
0 |
253 |
by aduffy33 Tue, 2024-03-12 12:52 |
|
|
Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
0 |
2,429 |
by wtscrystal Mon, 2014-04-21 06:47 |
|
|
how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
0 |
991 |
by Danielsebas Tue, 2019-09-24 05:03 |
|
|
Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
0 |
962 |
by Sunidhi Sun, 2020-11-01 11:01 |
|
|
SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
813 |
by Soler Sat, 2021-11-20 23:41 |
|
|
Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
0 |
1,461 |
by jferrie Mon, 2018-04-23 15:25 |
|
|
Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
0 |
1,421 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
|
|
MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
1,038 |
by yinasun Fri, 2019-07-26 02:17 |
|
|
How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
0 |
956 |
by haom Tue, 2020-09-01 18:50 |
|
|
calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
0 |
1,117 |
by rlwoltz Tue, 2021-08-03 23:26 |
|
|
On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
0 |
565 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
|
|
how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
0 |
1,540 |
by albumns Mon, 2014-04-21 06:47 |
|
|
ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
0 |
968 |
by pci112 Mon, 2021-04-12 08:12 |
|
|
Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
0 |
595 |
by aastha.pal Mon, 2022-06-27 09:34 |
|
|
GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
0 |
534 |
by Delfosse57 Mon, 2023-08-07 13:16 |
|
|
Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,684 |
by SenyorDrew Thu, 2016-08-11 05:56 |
|
|
RMSD filter by Soler » Sat, 2022-01-15 22:09 |
0 |
814 |
by Soler Sat, 2022-01-15 22:09 |
|
|
Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
0 |
640 |
by almeida85 Thu, 2022-11-17 01:04 |
|
|
Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,583 |
by lanselibai Sun, 2014-11-16 10:44 |
|
|
alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
0 |
1,229 |
by rlwoltz Mon, 2019-03-11 18:32 |
|
|
reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,387 |
by hajar Wed, 2020-06-10 11:17 |
|
|
Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
0 |
605 |
by Karthik Wed, 2022-07-13 23:45 |
|
|
Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
0 |
556 |
by Martin Floor Sat, 2023-10-07 10:17 |
|
|
How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
893 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
|
|
Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
0 |
339 |
by rnogy Mon, 2023-11-06 17:06 |
|
|
Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
0 |
1,860 |
by anirbanzz Mon, 2014-04-21 06:47 |
|
|
Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
0 |
1,013 |
by rohi Mon, 2021-03-15 06:31 |
|
|
How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
0 |
448 |
by JasonIsaac Tue, 2023-05-02 03:39 |
|
|
Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
0 |
709 |
by mgupta Fri, 2022-12-09 01:03 |
|
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
0 |
1,640 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
871 |
by jeanramos Mon, 2020-07-13 00:56 |
|
|
Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
1,078 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
|
|
Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
0 |
934 |
by michelleqyh Fri, 2020-08-21 09:00 |
|
|
Canceling jobs - RosettaDock5.0 by katie » Tue, 2024-04-09 12:30 |
0 |
165 |
by katie Tue, 2024-04-09 12:30 |
|
|
Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
999 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
|
|
Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
0 |
422 |
by mrosam Thu, 2023-05-25 05:14 |
|
|
Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
0 |
1,685 |
by myang Mon, 2014-04-21 06:47 |
|
|
Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
0 |
805 |
by tisozaki Tue, 2021-12-14 17:16 |
|
|
Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
1,228 |
by zhoubin Fri, 2019-01-04 13:14 |
|
|
Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
1,065 |
by Kazu Wed, 2020-05-20 11:58 |
|
|
Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
1,004 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
|
|
Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,603 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
0 |
565 |
by JasonIsaac Wed, 2023-02-22 18:36 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,669 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
1,192 |
by bio_james Wed, 2017-12-13 09:13 |
|
|
env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
1,165 |
by bazzoli Wed, 2018-10-10 01:59 |
|
|
Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
0 |
599 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
|
|
how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
0 |
446 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
|
|
Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
1,003 |
by kalabharath Mon, 2020-06-29 06:59 |
|
|
Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
0 |
784 |
by CameronJA Mon, 2021-06-14 16:12 |
|
|
Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
0 |
1,817 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
1,132 |
by BioPython Sun, 2019-05-12 20:07 |
|
|
Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
859 |
by pedro.guillem Thu, 2020-07-23 03:45 |
|
|
Segmentation Fault by ileanexis » Mon, 2024-03-11 08:53 |
0 |
211 |
by ileanexis Mon, 2024-03-11 08:53 |
|
|
Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
1,189 |
by frankfurter1 Wed, 2018-05-09 04:40 |
|
|
Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
905 |
by pedro.guillem Thu, 2020-05-14 04:22 |
|
|
protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
0 |
775 |
by guowuchen Thu, 2022-06-23 04:43 |
|
|
Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
0 |
684 |
by tlopes Wed, 2022-01-05 18:19 |
|
|
solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
1,313 |
by ziqi1234 Thu, 2018-05-24 02:18 |
|
|
Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
1,268 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
|
|
distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,540 |
by tricia Mon, 2014-04-21 06:47 |
|
|
Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
1,206 |
by Nicole Deng Sat, 2020-06-06 06:40 |
|
|
Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
0 |
564 |
by Wexter300 Sat, 2023-09-16 14:23 |
|
|
Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
0 |
1,575 |
by gobli033 Mon, 2014-04-21 06:47 |
|
|
RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,678 |
by sdh Mon, 2014-04-21 06:47 |