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Rosetta 3 - General
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,555 |
by achambe Wed, 2016-01-13 10:46 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,837 |
by smlewis Mon, 2014-04-21 06:47 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,798 |
by rmoretti Tue, 2015-07-14 15:27 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,336 |
by smlewis Mon, 2014-04-21 06:47 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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2,198 |
by rmoretti Wed, 2015-02-18 09:19 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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2,008 |
by smlewis Wed, 2017-06-28 06:59 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,649 |
by rmoretti Mon, 2019-07-08 08:05 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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1,285 |
by zivben Sat, 2021-07-31 08:16 |
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Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score by mrosam » Fri, 2024-04-19 07:57 |
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207 |
by rmoretti Thu, 2024-06-20 13:38 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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2,865 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
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2,366 |
by smlewis Mon, 2014-04-21 06:47 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
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523 |
by rmoretti Wed, 2023-08-23 08:26 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
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3,649 |
by rmoretti Mon, 2014-04-21 06:47 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
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2,261 |
by rmoretti Mon, 2014-04-21 06:48 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
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2,139 |
by nawsad Wed, 2014-06-25 13:26 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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2,288 |
by rmoretti Wed, 2015-09-02 12:48 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
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1,816 |
by smlewis Wed, 2016-08-24 07:23 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,459 |
by matteoferla Wed, 2020-01-01 04:30 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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1,166 |
by rmoretti Tue, 2021-02-09 10:29 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,495 |
by smlewis Mon, 2014-04-21 06:47 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
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1,986 |
by rmoretti Tue, 2016-07-12 08:40 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
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1,717 |
by jeliazkov Tue, 2017-07-18 09:51 |
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Is it impossible to use the ddg_monomer function on a non-monomeric structure? by Wexter300 » Sat, 2024-05-25 14:16 |
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111 |
by rmoretti Thu, 2024-06-20 13:24 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,770 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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3,181 |
by smlewis Mon, 2014-04-21 06:47 |
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Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
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15,651 |
by rmoretti Sat, 2015-09-05 12:10 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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2,049 |
by smlewis Tue, 2018-06-19 10:31 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
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2,480 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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3,170 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
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1,856 |
by rmoretti Thu, 2016-04-28 15:57 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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3,680 |
by rmoretti Wed, 2019-04-03 09:31 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,938 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
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1,214 |
by nannemdp Sun, 2021-06-06 09:26 |
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Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
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2,355 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
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3,632 |
by rmoretti Mon, 2014-04-21 06:47 |
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symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
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2,132 |
by rmoretti Tue, 2016-09-13 07:41 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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1,147 |
by gezmi Sat, 2021-11-06 15:26 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
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2,311 |
by rmoretti Mon, 2014-04-21 06:47 |
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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2,154 |
by rmoretti Fri, 2015-07-03 13:14 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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2,645 |
by smlewis Mon, 2014-04-21 06:47 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
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2,148 |
by rmoretti Wed, 2017-03-29 12:37 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
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1,578 |
by jeliazkov Fri, 2019-05-03 07:00 |
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Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
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2,381 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
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2,194 |
by rmoretti Mon, 2016-11-14 14:26 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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1,370 |
by sia Tue, 2022-07-05 05:47 |
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rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
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618 |
by Sergey Thu, 2023-04-27 12:03 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
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1,736 |
by rmoretti Wed, 2018-11-21 14:01 |
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mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
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823 |
by matteoferla Thu, 2022-06-09 14:41 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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1,796 |
by rmoretti Wed, 2018-08-01 16:04 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
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1,515 |
by rmoretti Tue, 2021-02-09 12:19 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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813 |
by rmoretti Mon, 2023-02-06 14:42 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
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2,425 |
by smlewis Mon, 2014-04-21 06:47 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,409 |
by smlewis Mon, 2014-04-21 06:47 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,457 |
by smlewis Mon, 2014-04-21 06:47 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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1,492 |
by smlewis Wed, 2019-05-29 13:21 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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1,269 |
by rmoretti Mon, 2022-09-12 07:01 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,737 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
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2,284 |
by yuvals Mon, 2014-10-06 15:02 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,622 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,515 |
by smlewis Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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2,505 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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3,157 |
by rmoretti Mon, 2014-04-21 06:48 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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1,398 |
by rmoretti Tue, 2021-04-13 06:42 |
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Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
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908 |
by rmoretti Tue, 2022-06-28 11:06 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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2,109 |
by nawsad Fri, 2014-06-20 03:00 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
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2,073 |
by rmoretti Thu, 2015-08-06 09:28 |
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"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
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2,347 |
by smlewis Thu, 2016-08-11 13:16 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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2,102 |
by jadolfbr Wed, 2017-11-01 10:11 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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1,175 |
by rmoretti Fri, 2022-02-18 11:14 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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2,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
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2,317 |
by smlewis Mon, 2014-04-21 06:47 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,766 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
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2,120 |
by rmoretti Mon, 2014-04-21 06:47 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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2,199 |
by rmoretti Thu, 2018-06-28 14:28 |
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How do I implement more CPU cores in the execution of FlexPepDock? by ChoripanSalado » Thu, 2024-05-02 08:55 |
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208 |
by rmoretti Thu, 2024-06-20 13:34 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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2,345 |
by smlewis Mon, 2014-04-21 06:48 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
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2,162 |
by rmoretti Tue, 2016-07-12 08:36 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,882 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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2,190 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
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2,290 |
by smlewis Mon, 2014-04-21 06:47 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,635 |
by rmoretti Mon, 2014-04-21 06:48 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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2,133 |
by vmulligan Tue, 2019-03-26 11:30 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,425 |
by rmoretti Mon, 2014-04-21 06:47 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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2,205 |
by rmoretti Tue, 2014-11-04 10:35 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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2,045 |
by rmoretti Sat, 2015-09-19 13:20 |
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Illegal attempt to score with non-identical atom set between pose and etable by ng98 » Fri, 2024-06-07 03:22 |
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127 |
by rmoretti Tue, 2024-06-11 02:45 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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4,032 |
by rmoretti Fri, 2014-05-23 08:09 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,912 |
by rmoretti Fri, 2015-07-03 12:58 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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2,140 |
by smlewis Mon, 2014-04-21 06:47 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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2,072 |
by smlewis Sun, 2016-03-13 15:25 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
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1,753 |
by rmoretti Tue, 2017-03-28 09:02 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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1,190 |
by taylorjones Wed, 2021-06-09 16:30 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,419 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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2,056 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,412 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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656 |
by ajasja Wed, 2023-04-05 00:20 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,597 |
by Rick_Baker Wed, 2019-09-11 15:35 |