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Rosetta 3 - General
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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1,196 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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1,205 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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1,205 |
by rmoretti Mon, 2023-05-15 15:23 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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1,208 |
by asbelx Wed, 2021-09-08 23:19 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
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1,214 |
by matteoferla Mon, 2021-08-09 01:53 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
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1,214 |
by nannemdp Sun, 2021-06-06 09:26 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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1,218 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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1,227 |
by zhoubin Fri, 2019-01-04 13:14 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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1,228 |
by rlwoltz Mon, 2019-03-11 18:32 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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1,232 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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1,234 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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1,237 |
by asbelx Mon, 2022-06-06 23:15 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,240 |
by fgomes Fri, 2019-11-22 19:12 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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1,245 |
by rmoretti Mon, 2022-11-14 07:27 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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1,249 |
by LanMei Tue, 2022-03-22 20:45 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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1,251 |
by mb0261 Mon, 2022-09-26 07:50 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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1,254 |
by rmoretti Thu, 2022-09-29 00:15 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,267 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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1,270 |
by rmoretti Mon, 2022-09-12 07:01 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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1,278 |
by ahuls1 Thu, 2021-07-29 13:23 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,281 |
by ela Fri, 2018-08-31 02:53 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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1,285 |
by zivben Sat, 2021-07-31 08:16 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
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1,287 |
by rmoretti Wed, 2021-07-14 07:07 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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1,290 |
by matteoferla Thu, 2021-04-01 04:06 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,294 |
by rmoretti Tue, 2021-02-09 10:48 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,297 |
by rmoretti Wed, 2021-01-20 07:39 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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1,300 |
by rmoretti Tue, 2021-04-20 13:06 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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1,311 |
by ldx022 Sat, 2023-03-11 16:53 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,312 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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1,319 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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1,325 |
by windmill Thu, 2020-06-18 21:32 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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1,326 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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1,330 |
by rjacak Thu, 2022-03-31 10:53 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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1,335 |
by cryosky Fri, 2021-09-17 22:04 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,343 |
by Jhreed Fri, 2016-07-08 13:44 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,360 |
by matteoferla Fri, 2020-04-10 02:40 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,361 |
by taylorjones Mon, 2021-04-05 13:17 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,364 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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1,366 |
by e3lm Fri, 2022-05-06 16:10 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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1,369 |
by rmoretti Wed, 2021-06-23 02:17 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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1,370 |
by rmoretti Mon, 2022-07-18 11:56 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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1,371 |
by sia Tue, 2022-07-05 05:47 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,381 |
by sheehajh Fri, 2020-02-21 12:41 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
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1,382 |
by lanselibai Thu, 2021-06-24 10:16 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,385 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,386 |
by hajar Wed, 2020-06-10 11:17 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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1,386 |
by ericlang Mon, 2021-07-05 06:59 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,397 |
by amelie.stein Mon, 2020-09-28 10:41 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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1,398 |
by rmoretti Tue, 2021-04-13 06:42 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
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1,400 |
by lanselibai Wed, 2021-06-23 13:21 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,402 |
by jackzzs Mon, 2023-05-15 03:17 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,416 |
by aloshbau Tue, 2021-03-09 02:47 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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1,417 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,420 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,429 |
by matteoferla Tue, 2020-04-14 03:36 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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1,432 |
by hong wei Thu, 2021-11-25 02:46 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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1,435 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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1,436 |
by rmoretti Tue, 2021-02-09 11:30 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,443 |
by rmoretti Mon, 2019-11-04 12:54 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,446 |
by fmerino Mon, 2017-10-16 04:02 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,449 |
by vmulligan Mon, 2020-06-29 13:09 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,457 |
by rmoretti Tue, 2021-02-09 12:35 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,458 |
by rmoretti Tue, 2021-02-09 12:25 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,459 |
by matteoferla Wed, 2020-01-01 04:30 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,460 |
by jferrie Mon, 2018-04-23 15:25 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,463 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,469 |
by matteoferla Fri, 2020-07-24 03:06 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,470 |
by matteoferla Sat, 2020-06-20 03:56 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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1,491 |
by rmoretti Tue, 2020-10-13 11:40 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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1,492 |
by smlewis Wed, 2019-05-29 13:21 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,498 |
by a.book Wed, 2018-10-03 15:56 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,499 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,499 |
by rmoretti Tue, 2019-07-09 15:59 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
1,500 |
by rmoretti Mon, 2019-08-26 14:52 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,502 |
by albumns Mon, 2014-04-21 06:47 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
1 |
1,506 |
by rmoretti Tue, 2021-02-09 12:02 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
1 |
1,506 |
by renedominik Wed, 2020-02-12 06:16 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,508 |
by DanielK Mon, 2014-04-21 06:47 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
1,515 |
by rmoretti Tue, 2021-02-09 12:19 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
1,519 |
by rmoretti Wed, 2020-04-01 10:10 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,537 |
by dgront Thu, 2021-02-11 08:30 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
0 |
1,539 |
by albumns Mon, 2014-04-21 06:47 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,539 |
by tricia Mon, 2014-04-21 06:47 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,552 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
3 |
1,552 |
by aniyaz Wed, 2023-01-11 01:24 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,552 |
by sayan500 Tue, 2019-07-30 22:20 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,553 |
by exchhattu Mon, 2014-04-21 06:47 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
1,555 |
by rmoretti Sat, 2019-03-30 12:10 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
1,558 |
by almeida85 Mon, 2021-02-08 09:50 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,559 |
by smlewis Fri, 2019-06-28 13:56 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
1,559 |
by matteoferla Thu, 2021-09-02 03:50 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
1,569 |
by connyyu Thu, 2019-04-18 03:26 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,570 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
0 |
1,574 |
by gobli033 Mon, 2014-04-21 06:47 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,578 |
by jeliazkov Fri, 2019-05-03 07:00 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
1 |
1,581 |
by brownbp1 Tue, 2021-02-09 12:12 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,582 |
by lanselibai Sun, 2014-11-16 10:44 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
1,584 |
by rmoretti Wed, 2019-04-03 10:03 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
1,586 |
by rmoretti Wed, 2019-09-18 10:49 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
2 |
1,591 |
by patcD Wed, 2021-09-01 06:54 |