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Rosetta 3 - General
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,419 |
by smlewis Mon, 2014-04-21 06:47 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
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2,994 |
by smlewis Mon, 2014-04-21 06:47 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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2,228 |
by rmoretti Fri, 2014-09-12 09:11 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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6,133 |
by rmoretti Tue, 2015-11-10 11:52 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
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2,374 |
by rmoretti Fri, 2016-10-14 15:46 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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1,647 |
by smlewis Wed, 2020-03-04 07:40 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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954 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,620 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,586 |
by rmoretti Wed, 2019-09-18 10:49 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,459 |
by rmoretti Tue, 2021-02-09 12:25 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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1,163 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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764 |
by JW_24 Tue, 2023-01-24 04:55 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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2,274 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
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3,481 |
by smlewis Mon, 2014-04-21 06:47 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
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2,495 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,533 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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2,219 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,184 |
by rmoretti Fri, 2017-04-21 07:52 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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784 |
by rmoretti Wed, 2022-09-07 09:19 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,726 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,252 |
by rmoretti Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
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2,247 |
by frichter Mon, 2014-04-21 06:47 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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2,418 |
by jadolfbr Fri, 2014-10-31 08:55 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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2,315 |
by rmoretti Tue, 2018-01-30 09:08 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,794 |
by vmulligan Sat, 2020-04-11 17:40 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,771 |
by matteoferla Mon, 2021-03-22 08:29 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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2,439 |
by rmoretti Tue, 2014-07-01 12:21 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,755 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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2,294 |
by jkleman Tue, 2018-07-31 13:19 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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1,538 |
by dgront Thu, 2021-02-11 08:30 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
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2,639 |
by rmoretti Mon, 2014-04-21 06:47 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
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5,272 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
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2,283 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
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2,413 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
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4,885 |
by rmoretti Sat, 2014-03-22 11:40 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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2,287 |
by rmoretti Wed, 2015-02-18 09:17 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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1,279 |
by ahuls1 Thu, 2021-07-29 13:23 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
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2,814 |
by jtmacd Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
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2,063 |
by smlewis Mon, 2014-04-21 06:47 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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2,463 |
by rmoretti Thu, 2014-10-16 10:33 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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2,075 |
by smlewis Sun, 2016-01-10 10:02 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,362 |
by taylorjones Mon, 2021-04-05 13:17 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,579 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,965 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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942 |
by matteoferla Wed, 2022-07-20 10:33 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,348 |
by rmoretti Tue, 2014-07-01 12:45 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,698 |
by ac.research Sat, 2017-11-18 06:54 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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1,618 |
by jkleman Thu, 2020-01-16 11:05 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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2,257 |
by sid Mon, 2014-04-21 06:47 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
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2,847 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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5,607 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
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2,983 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,640 |
by rmoretti Mon, 2017-08-21 09:55 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,398 |
by amelie.stein Mon, 2020-09-28 10:41 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
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2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,173 |
by smlewis Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,817 |
by smlewis Mon, 2014-04-21 06:47 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
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1,788 |
by matteoferla Tue, 2020-06-23 10:58 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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1,117 |
by rmoretti Tue, 2022-08-09 06:52 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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2,078 |
by rmoretti Tue, 2015-10-27 08:46 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,506 |
by renedominik Wed, 2020-02-12 06:16 |
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Error about using BuildDeNovoBackboneMover by ng98 » Wed, 2024-05-29 01:47 |
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140 |
by rmoretti Thu, 2024-06-20 13:22 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,783 |
by smlewis Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
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2,321 |
by smlewis Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,354 |
by smlewis Mon, 2014-04-21 06:47 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,627 |
by smlewis Mon, 2014-04-21 06:47 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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2,055 |
by smlewis Mon, 2014-04-21 06:48 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,283 |
by rmoretti Mon, 2014-05-12 07:50 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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2,363 |
by rmoretti Mon, 2015-05-25 11:07 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
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1,954 |
by rmoretti Wed, 2016-06-29 10:20 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,901 |
by jadolfbr Thu, 2019-08-29 14:29 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,265 |
by smlewis Mon, 2014-04-21 06:47 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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2,319 |
by rmoretti Tue, 2014-06-10 11:34 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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2,066 |
by smlewis Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,320 |
by smlewis Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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3,391 |
by smlewis Tue, 2014-12-23 13:58 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,801 |
by rmoretti Fri, 2017-04-14 08:37 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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2,127 |
by smlewis Mon, 2018-04-16 16:32 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,748 |
by rmoretti Tue, 2019-07-09 15:48 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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829 |
by rmoretti Fri, 2022-08-26 14:51 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,506 |
by smlewis Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,294 |
by smlewis Mon, 2014-04-21 06:47 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,417 |
by aloshbau Tue, 2021-03-09 02:47 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,657 |
by smlewis Fri, 2016-07-22 07:31 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,091 |
by rmoretti Fri, 2018-08-03 08:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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1,133 |
by rmoretti Tue, 2021-11-30 07:41 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,279 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
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2,390 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
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2,451 |
by smlewis Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
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3,122 |
by smlewis Fri, 2014-02-28 05:45 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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2,285 |
by rmoretti Mon, 2017-05-15 09:03 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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904 |
by rmoretti Mon, 2022-09-12 06:58 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,142 |
by rmoretti Mon, 2014-04-21 06:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,898 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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820 |
by matteoferla Fri, 2022-06-17 10:38 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,295 |
by rmoretti Tue, 2021-02-09 10:48 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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1,023 |
by jadolfbr Sat, 2022-02-12 23:16 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
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2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
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2,071 |
by smlewis Mon, 2014-04-21 06:47 |