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Rosetta 3 - General
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,592 |
by justin Mon, 2014-04-21 06:47 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
4 |
1,595 |
by almeida85 Thu, 2022-08-11 00:29 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,595 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
1,597 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,602 |
by ctaylor Mon, 2014-04-21 06:47 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
1 |
1,604 |
by vmulligan Wed, 2021-04-28 14:20 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
0 |
1,606 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,608 |
by tevang Mon, 2014-04-21 06:47 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
1,609 |
by rmoretti Fri, 2021-05-28 08:54 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
0 |
1,610 |
by IgaK Mon, 2014-04-21 06:47 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,616 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
1,618 |
by jkleman Thu, 2020-01-16 11:05 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,618 |
by rmoretti Mon, 2018-10-08 11:20 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,618 |
by justin Mon, 2014-04-21 06:47 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
1 |
1,621 |
by rmoretti Tue, 2021-02-09 13:44 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
1 |
1,631 |
by rmoretti Thu, 2018-02-22 09:29 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
1,636 |
by vmulligan Mon, 2019-04-08 14:49 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
0 |
1,639 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
1 |
1,640 |
by rmoretti Mon, 2017-08-21 09:55 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
1,642 |
by rmoretti Mon, 2019-08-26 15:00 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
1,645 |
by dfcoelho Tue, 2020-02-04 07:45 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
1,647 |
by smlewis Wed, 2020-03-04 07:40 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,647 |
by AJVincelli Sun, 2018-11-25 11:09 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
1,649 |
by rmoretti Mon, 2019-07-08 08:05 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,650 |
by pci112 Thu, 2021-03-25 01:44 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,652 |
by vasek Mon, 2014-04-21 06:48 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
1 |
1,661 |
by smlewis Thu, 2018-06-28 13:34 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
0 |
1,661 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,668 |
by DanielK Mon, 2014-04-21 06:47 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
1 |
1,670 |
by Loki01 Wed, 2017-12-13 05:27 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,675 |
by rlwoltz Fri, 2019-02-01 10:31 |
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RosettaDock - protonation states by LWilliamson » Tue, 2023-08-15 08:15 |
6 |
1,676 |
by nannemdp Thu, 2023-08-24 08:21 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,677 |
by sdh Mon, 2014-04-21 06:47 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
1 |
1,679 |
by danpf Tue, 2019-09-03 10:39 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,683 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
1,683 |
by rmoretti Thu, 2018-06-28 14:22 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
0 |
1,684 |
by myang Mon, 2014-04-21 06:47 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
2 |
1,689 |
by amystevens Thu, 2021-09-30 14:18 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
3 |
1,691 |
by ssrb Tue, 2022-07-05 11:07 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
0 |
1,696 |
by abhishek Mon, 2014-04-21 06:47 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
1 |
1,698 |
by rmoretti Tue, 2021-02-09 09:37 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
1 |
1,698 |
by ac.research Sat, 2017-11-18 06:54 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,707 |
by rmoretti Mon, 2019-08-26 15:01 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
1 |
1,710 |
by smlewis Tue, 2018-08-07 16:59 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,717 |
by jeliazkov Tue, 2017-07-18 09:51 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,732 |
by matteoferla Thu, 2021-06-03 08:24 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
1 |
1,733 |
by rmoretti Mon, 2018-03-19 09:08 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
1,736 |
by rmoretti Wed, 2018-11-21 14:01 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
1,739 |
by jadolfbr Fri, 2018-11-09 09:17 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
2 |
1,744 |
by JW_24 Wed, 2020-09-23 01:27 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,746 |
by diasmarieli Fri, 2021-11-26 05:11 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,748 |
by rmoretti Tue, 2019-07-09 15:48 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,753 |
by rmoretti Tue, 2017-03-28 09:02 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,755 |
by protein_fan Fri, 2022-04-15 17:41 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
1 |
1,755 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,764 |
by abdullah Mon, 2014-04-21 06:47 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
1 |
1,771 |
by matteoferla Mon, 2021-03-22 08:29 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
1 |
1,772 |
by jyy Mon, 2020-01-13 17:19 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,774 |
by DanielK Mon, 2014-04-21 06:47 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
1,775 |
by matteoferla Mon, 2021-07-12 02:23 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
3 |
1,775 |
by csvajda Mon, 2022-03-07 07:46 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
1 |
1,777 |
by rmoretti Wed, 2018-11-21 14:14 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
6 |
1,784 |
by rmoretti Tue, 2023-05-16 07:10 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
1 |
1,785 |
by rmoretti Mon, 2018-02-12 09:39 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,788 |
by matteoferla Tue, 2020-06-23 10:58 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
1 |
1,789 |
by rmoretti Wed, 2021-02-03 14:45 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
1 |
1,792 |
by rmoretti Tue, 2018-01-30 08:29 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
2 |
1,793 |
by Smbat Thu, 2020-07-30 03:07 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,794 |
by jkleman Sat, 2018-04-14 10:55 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
1 |
1,794 |
by vmulligan Sat, 2020-04-11 17:40 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
1,796 |
by rmoretti Wed, 2018-08-01 16:04 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,800 |
by rmoretti Wed, 2017-09-06 08:47 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
0 |
1,805 |
by w107kdk Mon, 2014-04-21 06:47 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,808 |
by rmoretti Tue, 2019-07-09 15:57 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,808 |
by matteoferla Sat, 2020-05-23 03:09 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
1,815 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
0 |
1,816 |
by exchhattu Mon, 2014-04-21 06:47 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,816 |
by smlewis Wed, 2016-08-24 07:23 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,838 |
by Karol Mon, 2016-08-29 05:27 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
1,847 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,848 |
by mxp Wed, 2020-07-08 23:25 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
4 |
1,855 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,856 |
by rmoretti Thu, 2016-04-28 15:57 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
0 |
1,859 |
by anirbanzz Mon, 2014-04-21 06:47 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,863 |
by smlewis Wed, 2017-03-22 14:02 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,876 |
by rmoretti Fri, 2017-09-08 15:15 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
1 |
1,877 |
by rmoretti Mon, 2018-02-05 15:44 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
1 |
1,882 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
2 |
1,883 |
by rohi Tue, 2020-10-13 09:15 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,888 |
by possu Tue, 2016-08-30 16:57 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,889 |
by rmoretti Tue, 2016-07-12 08:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
1 |
1,898 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
1 |
1,901 |
by jadolfbr Thu, 2019-08-29 14:29 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,902 |
by bjharris Wed, 2020-09-09 20:04 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
1 |
1,903 |
by matteoferla Thu, 2018-09-13 06:21 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,912 |
by joseph Mon, 2014-04-21 06:47 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,916 |
by jurkm Mon, 2014-04-21 06:47 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,927 |
by rmoretti Thu, 2016-09-08 07:56 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
1,929 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,930 |
by j.schmue Tue, 2020-01-28 13:31 |