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Rosetta 3 - General
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,429 |
by matteoferla Tue, 2020-04-14 03:36 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,679 |
by danpf Tue, 2019-09-03 10:39 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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1,003 |
by ajasja Thu, 2021-11-18 00:33 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,279 |
by smlewis Mon, 2014-04-21 06:47 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,712 |
by rmoretti Mon, 2014-06-16 08:23 |
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why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
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2,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,963 |
by rmoretti Thu, 2016-04-28 14:47 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
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1,287 |
by rmoretti Wed, 2021-07-14 07:07 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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779 |
by rmoretti Wed, 2022-09-14 09:14 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,837 |
by smlewis Mon, 2014-04-21 06:47 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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2,067 |
by smlewis Tue, 2015-12-22 08:31 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
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2,421 |
by rmoretti Wed, 2018-01-31 14:57 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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2,047 |
by rmoretti Fri, 2020-11-13 12:58 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
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3,914 |
by rmoretti Mon, 2014-04-21 06:48 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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2,269 |
by nawsad Fri, 2014-06-20 02:48 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
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1,944 |
by smlewis Mon, 2016-08-22 10:39 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
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2,623 |
by denatured Fri, 2019-12-13 11:19 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,297 |
by rmoretti Wed, 2021-01-20 07:39 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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960 |
by vmulligan Thu, 2022-03-03 18:48 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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2,865 |
by smlewis Mon, 2014-04-21 06:47 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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2,258 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
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3,463 |
by smlewis Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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3,306 |
by smlewis Mon, 2014-04-21 06:47 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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2,155 |
by rmoretti Mon, 2015-03-30 16:38 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
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2,431 |
by rmoretti Tue, 2016-07-12 08:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,683 |
by rmoretti Thu, 2018-06-28 14:22 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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1,642 |
by rmoretti Mon, 2019-08-26 15:00 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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1,620 |
by rmoretti Tue, 2021-02-09 13:44 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
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1,558 |
by matteoferla Thu, 2021-09-02 03:50 |
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Error about rifdocking step 19 motifgraft mover by ng98 » Wed, 2024-05-22 02:25 |
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151 |
by rmoretti Wed, 2024-05-22 08:07 |
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Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
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2,380 |
by smlewis Mon, 2014-04-21 06:47 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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2,213 |
by rmoretti Tue, 2014-11-11 13:22 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
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2,508 |
by smlewis Sun, 2016-01-24 03:24 |
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Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
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1,930 |
by rmoretti Thu, 2017-02-02 08:52 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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1,603 |
by vmulligan Wed, 2021-04-28 14:20 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
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2,487 |
by Anonymous Mon, 2014-04-21 06:47 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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3,194 |
by rmoretti Mon, 2014-04-21 06:48 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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2,657 |
by rmoretti Wed, 2014-07-16 08:07 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,903 |
by matteoferla Thu, 2018-09-13 06:21 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,435 |
by paulbo Sun, 2024-02-04 22:03 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,445 |
by smlewis Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,770 |
by smlewis Mon, 2014-04-21 06:47 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
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2,103 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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2,120 |
by rmoretti Thu, 2015-04-30 07:13 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
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1,990 |
by rmoretti Wed, 2016-06-15 16:06 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
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2,500 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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2,348 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
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2,375 |
by rmoretti Mon, 2014-04-21 06:48 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,942 |
by rmoretti Mon, 2017-03-06 08:37 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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1,608 |
by rmoretti Fri, 2021-05-28 08:54 |
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Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
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2,254 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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2,438 |
by smlewis Mon, 2014-04-21 06:47 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
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4,149 |
by smlewis Mon, 2014-04-21 06:47 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
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1,863 |
by smlewis Wed, 2017-03-22 14:02 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
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1,794 |
by jkleman Sat, 2018-04-14 10:55 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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1,808 |
by rmoretti Tue, 2019-07-09 15:57 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
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806 |
by almeida85 Fri, 2022-08-12 05:56 |
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Error about rifdocking by ng98 » Mon, 2024-01-08 16:21 |
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404 |
by rmoretti Tue, 2024-01-09 23:41 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
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2,994 |
by smlewis Mon, 2014-04-21 06:47 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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2,228 |
by rmoretti Fri, 2014-09-12 09:11 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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6,133 |
by rmoretti Tue, 2015-11-10 11:52 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
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2,374 |
by rmoretti Fri, 2016-10-14 15:46 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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1,647 |
by smlewis Wed, 2020-03-04 07:40 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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954 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,620 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,800 |
by rmoretti Wed, 2017-09-06 08:47 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
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2,495 |
by smlewis Mon, 2014-04-21 06:47 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,409 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,533 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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2,219 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,184 |
by rmoretti Fri, 2017-04-21 07:52 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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783 |
by rmoretti Wed, 2022-09-07 09:19 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,252 |
by rmoretti Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
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2,247 |
by frichter Mon, 2014-04-21 06:47 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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2,418 |
by jadolfbr Fri, 2014-10-31 08:55 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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2,315 |
by rmoretti Tue, 2018-01-30 09:08 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,794 |
by vmulligan Sat, 2020-04-11 17:40 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,770 |
by matteoferla Mon, 2021-03-22 08:29 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,586 |
by rmoretti Wed, 2019-09-18 10:49 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,458 |
by rmoretti Tue, 2021-02-09 12:25 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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1,162 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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764 |
by JW_24 Tue, 2023-01-24 04:55 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
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2,317 |
by smlewis Mon, 2014-04-21 06:47 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
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2,639 |
by rmoretti Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,622 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
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2,413 |
by smlewis Mon, 2014-04-21 06:47 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,766 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
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4,885 |
by rmoretti Sat, 2014-03-22 11:40 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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2,287 |
by rmoretti Wed, 2015-02-18 09:17 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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1,278 |
by ahuls1 Thu, 2021-07-29 13:23 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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2,463 |
by rmoretti Thu, 2014-10-16 10:33 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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2,075 |
by smlewis Sun, 2016-01-10 10:02 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,361 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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2,439 |
by rmoretti Tue, 2014-07-01 12:21 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,755 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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2,294 |
by jkleman Tue, 2018-07-31 13:19 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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1,537 |
by dgront Thu, 2021-02-11 08:30 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,348 |
by rmoretti Tue, 2014-07-01 12:45 |