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Rosetta 3 - General
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,931 |
by j.schmue Tue, 2020-01-28 13:31 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,931 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,939 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,942 |
by rmoretti Mon, 2017-03-06 08:37 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
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1,944 |
by smlewis Mon, 2016-08-22 10:39 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
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1,945 |
by rmoretti Sat, 2017-12-02 10:22 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
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1,954 |
by rmoretti Wed, 2016-06-29 10:20 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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1,961 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,963 |
by rmoretti Thu, 2016-04-28 14:47 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,964 |
by Trentage Mon, 2014-04-21 06:47 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
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1,964 |
by guowuchen Wed, 2022-03-30 04:20 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,964 |
by rmoretti Tue, 2019-07-09 12:31 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,965 |
by jadolfbr Fri, 2016-02-05 15:32 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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1,965 |
by rmoretti Mon, 2023-02-20 16:07 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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1,983 |
by matteoferla Mon, 2022-01-10 06:44 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
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1,986 |
by rmoretti Tue, 2016-07-12 08:40 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
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1,990 |
by rmoretti Wed, 2016-06-15 16:06 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
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1,994 |
by jalan Thu, 2020-04-23 05:19 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
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1,999 |
by szcshr123 Fri, 2021-02-26 14:41 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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2,008 |
by smlewis Wed, 2017-06-28 06:59 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
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2,010 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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2,012 |
by rmoretti Thu, 2022-04-07 07:51 |
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new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
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2,012 |
by smlewis Mon, 2014-04-21 06:47 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
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2,012 |
by ssrb Tue, 2016-07-12 10:02 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
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2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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2,021 |
by matteoferla Fri, 2021-08-20 08:37 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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2,027 |
by Alvin Yang Wed, 2023-10-04 03:34 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
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2,029 |
by matteoferla Wed, 2019-08-21 11:58 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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2,032 |
by rmoretti Tue, 2021-02-09 13:45 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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2,045 |
by rmoretti Sat, 2015-09-19 13:20 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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2,048 |
by rmoretti Fri, 2020-11-13 12:58 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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2,049 |
by smlewis Tue, 2018-06-19 10:31 |
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scoring function changed from 2.3? by jarod » Mon, 2010-04-12 18:56 |
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2,051 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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2,055 |
by wtscrystal Mon, 2014-04-21 06:47 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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2,055 |
by smlewis Mon, 2014-04-21 06:48 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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2,056 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
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2,058 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
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2,063 |
by smlewis Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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2,066 |
by smlewis Mon, 2014-04-21 06:47 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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2,067 |
by smlewis Tue, 2015-12-22 08:31 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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2,067 |
by rmoretti Fri, 2015-07-03 13:51 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
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2,068 |
by rmoretti Wed, 2021-03-17 13:52 |
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build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
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2,071 |
by smlewis Mon, 2014-04-21 06:47 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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2,072 |
by smlewis Sun, 2016-03-13 15:25 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
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2,073 |
by rmoretti Thu, 2015-08-06 09:28 |
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problems in building rosetta3.1 (solved) by zpliu09 » Wed, 2010-03-31 02:03 |
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2,074 |
by smlewis Mon, 2014-04-21 06:47 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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2,075 |
by smlewis Sun, 2016-01-10 10:02 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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2,078 |
by rmoretti Tue, 2015-10-27 08:46 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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2,081 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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2,082 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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2,085 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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2,088 |
by rmoretti Tue, 2014-07-01 12:07 |
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max_nn by anusmita_sahoo » Thu, 2010-03-11 02:21 |
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2,090 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,091 |
by rmoretti Fri, 2018-08-03 08:59 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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2,096 |
by dfcoelho Tue, 2019-11-19 10:16 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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2,097 |
by nannemdp Tue, 2020-05-26 06:33 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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2,101 |
by ylwang Tue, 2019-10-08 18:34 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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2,102 |
by jadolfbr Wed, 2017-11-01 10:11 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
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2,103 |
by rmoretti Mon, 2014-04-21 06:48 |
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Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
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2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
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2,109 |
by rmoretti Wed, 2019-04-03 09:58 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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2,109 |
by nawsad Fri, 2014-06-20 03:00 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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2,120 |
by rmoretti Thu, 2015-04-30 07:13 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
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2,120 |
by rmoretti Mon, 2014-04-21 06:47 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
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2,121 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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2,127 |
by smlewis Mon, 2018-04-16 16:32 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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2,129 |
by burkheadlab Mon, 2014-04-21 06:47 |
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symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
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2,132 |
by rmoretti Tue, 2016-09-13 07:41 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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2,133 |
by vmulligan Tue, 2019-03-26 11:30 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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2,137 |
by rmoretti Tue, 2023-05-09 15:32 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
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2,139 |
by nawsad Wed, 2014-06-25 13:26 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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2,140 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
2,142 |
by David Tue, 2019-01-22 12:23 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
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2,148 |
by rmoretti Wed, 2017-03-29 12:37 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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2,150 |
by ac.research Fri, 2020-02-14 23:33 |
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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2,154 |
by rmoretti Fri, 2015-07-03 13:14 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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2,155 |
by rmoretti Mon, 2015-03-30 16:38 |
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Site-wide installations and 64-bit builds by bene » Tue, 2009-10-20 10:16 |
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2,155 |
by smlewis Mon, 2014-04-21 06:47 |
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Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
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2,156 |
by rmoretti Mon, 2016-11-14 15:12 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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2,156 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
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2,162 |
by rmoretti Tue, 2016-07-12 08:36 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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2,167 |
by rmoretti Mon, 2018-08-20 11:51 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
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2,169 |
by rmoretti Fri, 2016-04-08 08:43 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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2,171 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,173 |
by smlewis Mon, 2014-04-21 06:47 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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2,180 |
by rmoretti Sun, 2016-02-21 06:38 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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2,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,184 |
by rmoretti Fri, 2017-04-21 07:52 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
2,184 |
by rlwoltz Wed, 2021-03-24 22:36 |
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rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
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2,190 |
by smlewis Mon, 2014-04-21 06:47 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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2,190 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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2,194 |
by rmoretti Thu, 2023-02-16 13:48 |
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
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2,194 |
by rmoretti Mon, 2016-11-14 14:26 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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2,194 |
by smlewis Mon, 2014-04-21 06:47 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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2,198 |
by smlewis Mon, 2014-04-21 06:47 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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2,198 |
by rmoretti Wed, 2015-02-18 09:19 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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2,199 |
by rmoretti Thu, 2018-06-28 14:28 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,200 |
by rmoretti Mon, 2018-01-15 14:35 |