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Rosetta 3 - General
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
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2,983 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,640 |
by rmoretti Mon, 2017-08-21 09:55 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,398 |
by amelie.stein Mon, 2020-09-28 10:41 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,579 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,965 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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942 |
by matteoferla Wed, 2022-07-20 10:33 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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2,274 |
by smlewis Mon, 2014-04-21 06:47 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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2,078 |
by rmoretti Tue, 2015-10-27 08:46 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,507 |
by renedominik Wed, 2020-02-12 06:16 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
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5,272 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
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2,283 |
by smlewis Mon, 2014-04-21 06:47 |
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Error about using BuildDeNovoBackboneMover by ng98 » Wed, 2024-05-29 01:47 |
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140 |
by rmoretti Thu, 2024-06-20 13:22 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
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2,814 |
by jtmacd Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
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2,063 |
by smlewis Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,354 |
by smlewis Mon, 2014-04-21 06:47 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,627 |
by smlewis Mon, 2014-04-21 06:47 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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2,055 |
by smlewis Mon, 2014-04-21 06:48 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,283 |
by rmoretti Mon, 2014-05-12 07:50 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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2,363 |
by rmoretti Mon, 2015-05-25 11:07 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
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1,954 |
by rmoretti Wed, 2016-06-29 10:20 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,902 |
by jadolfbr Thu, 2019-08-29 14:29 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,817 |
by smlewis Mon, 2014-04-21 06:47 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
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1,789 |
by matteoferla Tue, 2020-06-23 10:58 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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1,117 |
by rmoretti Tue, 2022-08-09 06:52 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,320 |
by smlewis Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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3,391 |
by smlewis Tue, 2014-12-23 13:58 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,801 |
by rmoretti Fri, 2017-04-14 08:37 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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2,128 |
by smlewis Mon, 2018-04-16 16:32 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,749 |
by rmoretti Tue, 2019-07-09 15:48 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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829 |
by rmoretti Fri, 2022-08-26 14:51 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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2,257 |
by sid Mon, 2014-04-21 06:47 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
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2,847 |
by smlewis Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,294 |
by smlewis Mon, 2014-04-21 06:47 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,417 |
by aloshbau Tue, 2021-03-09 02:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,265 |
by smlewis Mon, 2014-04-21 06:47 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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2,319 |
by rmoretti Tue, 2014-06-10 11:34 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
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3,122 |
by smlewis Fri, 2014-02-28 05:45 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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2,285 |
by rmoretti Mon, 2017-05-15 09:03 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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904 |
by rmoretti Mon, 2022-09-12 06:58 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,142 |
by rmoretti Mon, 2014-04-21 06:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,899 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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820 |
by matteoferla Fri, 2022-06-17 10:38 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,783 |
by smlewis Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
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2,322 |
by smlewis Mon, 2014-04-21 06:47 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,657 |
by smlewis Fri, 2016-07-22 07:31 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,092 |
by rmoretti Fri, 2018-08-03 08:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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1,133 |
by rmoretti Tue, 2021-11-30 07:41 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
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2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,173 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
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2,390 |
by rmoretti Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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2,066 |
by smlewis Mon, 2014-04-21 06:47 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,506 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
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2,739 |
by mpacella Mon, 2014-04-21 06:47 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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2,500 |
by rmoretti Thu, 2015-04-02 12:52 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,889 |
by rmoretti Tue, 2016-07-12 08:48 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
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1,708 |
by rmoretti Mon, 2019-08-26 15:01 |
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Question about computer specifications requirement of RFdiffusion by ng98 » Mon, 2024-05-06 02:18 |
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301 |
by nannemdp Mon, 2024-05-06 20:09 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,631 |
by rmoretti Thu, 2018-02-22 09:29 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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1,809 |
by matteoferla Sat, 2020-05-23 03:09 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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1,301 |
by rmoretti Tue, 2021-04-20 13:06 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,295 |
by rmoretti Tue, 2021-02-09 10:48 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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1,023 |
by jadolfbr Sat, 2022-02-12 23:16 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
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2,925 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
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2,313 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
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2,719 |
by rmoretti Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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3,521 |
by rmoretti Mon, 2014-04-21 06:48 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
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2,380 |
by rmoretti Mon, 2016-09-05 09:39 |
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Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
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2,451 |
by smlewis Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,585 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
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2,761 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,667 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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2,180 |
by rmoretti Sun, 2016-02-21 06:38 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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2,082 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,556 |
by rmoretti Sat, 2019-03-30 12:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,471 |
by matteoferla Sat, 2020-06-20 03:56 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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1,732 |
by matteoferla Thu, 2021-06-03 08:24 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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1,251 |
by mb0261 Mon, 2022-09-26 07:50 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,279 |
by smlewis Mon, 2014-04-21 06:47 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
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2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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2,217 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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3,003 |
by amelie Tue, 2014-09-30 14:29 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,670 |
by Loki01 Wed, 2017-12-13 05:27 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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1,619 |
by rmoretti Mon, 2018-10-08 11:20 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,382 |
by sheehajh Fri, 2020-02-21 12:41 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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1,007 |
by aneeqh Fri, 2022-09-02 13:36 |
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build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
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2,071 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with fragment picking by gserci » Mon, 2024-06-17 17:37 |
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62 |
by rmoretti Thu, 2024-06-20 13:20 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,837 |
by smlewis Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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2,067 |
by rmoretti Fri, 2015-07-03 13:51 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,554 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,483 |
by IAndre Mon, 2014-04-21 06:47 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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2,410 |
by rmoretti Mon, 2014-12-15 02:37 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
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2,207 |
by rmoretti Thu, 2016-04-28 15:49 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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1,570 |
by connyyu Thu, 2019-04-18 03:26 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,450 |
by vmulligan Mon, 2020-06-29 13:09 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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1,369 |
by rmoretti Wed, 2021-06-23 02:17 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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2,245 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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3,092 |
by smlewis Mon, 2014-04-21 06:47 |