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Rosetta 3 - General
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,460 |
by rmoretti Mon, 2014-04-21 06:47 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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648 |
by mb0261 Tue, 2022-12-06 10:16 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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2,646 |
by smlewis Mon, 2014-04-21 06:47 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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637 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
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524 |
by rmoretti Wed, 2023-08-23 08:26 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,691 |
by smlewis Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
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3,306 |
by smlewis Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
4,365 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
6,610 |
by rmoretti Mon, 2014-11-03 16:39 |
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
2 |
2,880 |
by jtmacd Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,775 |
by DanielK Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,509 |
by DanielK Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,669 |
by DanielK Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
3,066 |
by DanielK Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,488 |
by Anonymous Mon, 2014-04-21 06:47 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
2 |
1,068 |
by Liviu Copoiu Tue, 2022-11-08 10:43 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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605 |
by Karthik Wed, 2022-07-13 23:45 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
9,141 |
by smlewis Mon, 2014-04-21 06:47 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
2,300 |
by matteoferla Mon, 2021-09-20 06:05 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
2,140 |
by nawsad Wed, 2014-06-25 13:26 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
1 |
2,206 |
by rmoretti Tue, 2014-11-04 10:35 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
2,013 |
by ssrb Tue, 2016-07-12 10:02 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,748 |
by diasmarieli Fri, 2021-11-26 05:11 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
5,775 |
by rmoretti Mon, 2014-04-21 06:47 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
2,112 |
by rmoretti Wed, 2019-04-03 09:58 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
3,069 |
by matteoferla Thu, 2018-10-04 01:30 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
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2,330 |
by smlewis Mon, 2014-04-21 06:47 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,704 |
by smlewis Wed, 2019-12-04 13:07 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
3,087 |
by rmoretti Thu, 2015-08-06 09:21 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
4,373 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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922 |
by rmoretti Tue, 2022-09-06 08:13 |
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PDB output sum by enoee » Fri, 2010-07-16 12:29 |
1 |
2,226 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
2 |
4,419 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
6 |
7,463 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,549 |
by smlewis Mon, 2014-04-21 06:47 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,210 |
by ltrabuco Mon, 2014-04-21 06:47 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,790 |
by matteoferla Tue, 2020-06-23 10:58 |
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Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
1 |
2,157 |
by rmoretti Mon, 2016-11-14 15:12 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
1,610 |
by rmoretti Fri, 2021-05-28 08:54 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,620 |
by rmoretti Mon, 2018-10-08 11:20 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
2,803 |
by everyday847 Thu, 2021-04-01 11:59 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,589 |
by DmitriiN Wed, 2016-06-01 15:46 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
1,216 |
by nannemdp Sun, 2021-06-06 09:26 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,280 |
by smlewis Mon, 2014-04-21 06:47 |
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Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,356 |
by smlewis Mon, 2014-04-21 06:47 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
3 |
3,702 |
by smlewis Mon, 2014-04-21 06:47 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
1 |
2,110 |
by nawsad Fri, 2014-06-20 03:00 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
1 |
3,606 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,762 |
by smlewis Mon, 2014-04-21 06:47 |
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packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
19,808 |
by Anonymous Mon, 2014-04-21 06:47 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,580 |
by smlewis Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
6,899 |
by rmoretti Mon, 2014-04-21 06:48 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
5,063 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
1 |
2,364 |
by rmoretti Mon, 2015-05-25 11:07 |
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Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
2 |
1,126 |
by jgustat Fri, 2022-07-01 13:26 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
905 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
2,286 |
by rmoretti Mon, 2017-05-15 09:03 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
6,864 |
by smlewis Mon, 2014-04-21 06:47 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,262 |
by rmoretti Mon, 2014-04-21 06:48 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
1,400 |
by rmoretti Tue, 2021-04-13 06:42 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,757 |
by smlewis Mon, 2014-04-21 06:47 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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565 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
780 |
by Antonia Wed, 2021-06-16 12:30 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
3,553 |
by scombs Mon, 2014-04-21 06:47 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
0 |
784 |
by CameronJA Mon, 2021-06-14 16:12 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
2 |
2,894 |
by JadAbbass Tue, 2014-02-18 07:27 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
1 |
2,240 |
by fred Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,800 |
by dgront Mon, 2014-04-21 06:47 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
6 |
5,742 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
2 |
4,535 |
by Victor Fri, 2014-01-31 10:41 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,323 |
by smlewis Mon, 2014-04-21 06:47 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
1 |
2,170 |
by rmoretti Fri, 2016-04-08 08:43 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,677 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
4 |
1,421 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,713 |
by rmoretti Mon, 2014-06-16 08:23 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
6,369 |
by robren Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,451 |
by smlewis Thu, 2016-01-14 08:19 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,987 |
by rmoretti Tue, 2016-07-12 08:40 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
1 |
2,355 |
by smlewis Mon, 2014-04-21 06:47 |
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New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
25 |
21,643 |
by smlewis Tue, 2016-06-28 09:05 |
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new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
1 |
2,013 |
by smlewis Mon, 2014-04-21 06:47 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,928 |
by rmoretti Thu, 2016-09-08 07:56 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,733 |
by rmoretti Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
3,093 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,130 |
by burkheadlab Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
4,094 |
by franfdez Mon, 2014-04-21 06:47 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,482 |
by rmoretti Fri, 2015-07-03 13:04 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
6 |
5,718 |
by rmoretti Mon, 2014-04-21 06:47 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
0 |
613 |
by SebastianBB Mon, 2022-11-21 08:33 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,561 |
by smlewis Fri, 2019-06-28 13:56 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,865 |
by jarek Mon, 2014-04-21 06:48 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
1,189 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,636 |
by smlewis Thu, 2016-04-21 16:00 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
1 |
4,278 |
by rmoretti Tue, 2018-04-10 16:00 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,955 |
by rmoretti Wed, 2016-06-29 10:20 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
1 |
817 |
by rmoretti Tue, 2022-09-06 08:22 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
1 |
3,182 |
by smlewis Mon, 2014-04-21 06:47 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
4,653 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,316 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
3,682 |
by rmoretti Wed, 2019-04-03 09:31 |