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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39 		2
 3,380 by jrcf
Tue, 2016-05-03 17:40
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54 		2
 3,374 by gw
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07 		4
 3,373 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01 		2
 3,368 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26 		3
 3,364 by msun
Mon, 2014-04-21 06:47
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55 		3
 3,354 by smlewis
Tue, 2016-12-20 10:40
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45 		3
 3,353 by SergeyP
Mon, 2018-11-12 09:19
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07 		3
 3,342 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06 		2
 3,340 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15 		2
 3,336 by zhisheng
Mon, 2014-04-21 06:47
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49 		2
 3,322 by pledor
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00 		1
 3,321 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06 		2
 3,316 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20 		1
 3,312 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48 		1
 3,307 by smlewis
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20 		3
 3,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23 		3
 3,286 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18 		3
 3,284 by smlewis
Thu, 2016-06-30 08:44
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 		1
 3,280 by rmoretti
Fri, 2015-07-03 13:24
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25 		2
 3,278 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56 		3
 3,274 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20 		2
 3,271 by doranhen
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11 		2
 3,264 by Trentage
Mon, 2014-04-21 06:47
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31 		5
 3,260 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47 		3
 3,259 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15 		1
 3,253 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19 		2
 3,250 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16 		2
 3,246 by einew
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00 		2
 3,244 by aminzia
Fri, 2019-07-26 13:14
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38 		4
 3,237 by maruhuang
Thu, 2019-09-26 18:55
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22 		2
 3,232 by frits
Mon, 2014-04-21 06:48
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34 		2
 3,229 by pitmand
Tue, 2015-05-26 12:20
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19 		2
 3,222 by alejandro
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01 		3
 3,219 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43 		2
 3,217 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43 		2
 3,215 by lvtun
Mon, 2014-04-21 06:47
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33 		2
 3,212 by molon
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26 		2
 3,197 by Anatol
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25 		1
 3,195 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03 		2
 3,189 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51 		2
 3,184 by felipet
Sat, 2016-07-09 09:50
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47 		2
 3,184 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03 		1
 3,182 by smlewis
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45 		2
 3,179 by wangyr
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23 		2
 3,175 by dave
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21 		1
 3,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28 		2
 3,170 by phanvy
Wed, 2014-10-15 21:41
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28 		2
 3,168 by westleys
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44 		2
 3,160 by kalabharath
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12 		1
 3,158 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48 		2
 3,149 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28 		2
 3,149 by jtmacd
Mon, 2014-04-21 06:48
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23 		2
 3,148 by Lindsay
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29 		2
 3,147 by attesor
Fri, 2014-10-31 04:23
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48 		4
 3,143 by Kazu
Mon, 2020-05-18 10:52
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16 		1
 3,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37 		4
 3,142 by matteoferla
Mon, 2019-12-23 07:24
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29 		2
 3,141 by MRH
Mon, 2014-04-21 06:48
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03 		2
 3,139 by Run
Mon, 2014-04-21 06:48
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10 		2
 3,132 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42 		2
 3,132 by pachecoj
Thu, 2014-10-09 18:15
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46 		4
 3,131 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54 		2
 3,129 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27 		4
 3,127 by matteoferla
Sat, 2020-03-21 09:14
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31 		2
 3,127 by zdn3023
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33 		1
 3,125 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04 		1
 3,123 by smlewis
Fri, 2014-02-28 05:45
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45 		1
 3,115 by rmoretti
Wed, 2014-09-17 10:06
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25 		4
 3,111 by decrSTL
Tue, 2019-08-27 10:24
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33 		2
 3,109 by phanvy
Sun, 2014-06-22 23:29
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51 		2
 3,108 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39 		2
 3,108 by aroop
Mon, 2014-04-21 06:47
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29 		1
 3,103 by rmoretti
Mon, 2017-08-28 09:32
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33 		2
 3,102 by aaj
Mon, 2016-02-29 04:45
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54 		2
 3,101 by mintseris
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45 		2
 3,097 by doranhen
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29 		1
 3,093 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53 		2
 3,087 by rmoretti
Thu, 2015-08-06 09:21
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20 		1
 3,084 by smlewis
Mon, 2014-04-21 06:47
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35 		2
 3,083 by lah435
Thu, 2015-02-12 09:16
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39 		2
 3,081 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08 		2
 3,077 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09 		3
 3,069 by matteoferla
Thu, 2018-10-04 01:30
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23 		2
 3,066 by DanielK
Mon, 2014-04-21 06:47
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14 		2
 3,064 by rmoretti
Tue, 2015-08-18 17:11
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41 		2
 3,057 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37 		2
 3,051 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21 		3
 3,045 by renedominik
Mon, 2018-06-04 00:04
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52 		2
 3,039 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09 		2
 3,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48 		2
 3,021 by swoody
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06 		2
 3,017 by justin
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48 		1
 3,015 by reddybg
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26 		1
 3,014 by IAndre
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10 		3
 3,011 by ylwang
Wed, 2018-11-14 03:03
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45 		2
 3,008 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35 		2
 3,007 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57 		2
 3,006 by frichter
Mon, 2014-04-21 06:47
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36 		1
 3,004 by amelie
Tue, 2014-09-30 14:29
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25 		2
 3,002 by SergeyP
Sun, 2015-12-20 01:44