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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20 		4
 5,813 by phanvy
Wed, 2014-10-08 01:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53 		12
 14,008 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35 		1
 2,285 by yuvals
Mon, 2014-10-06 15:02
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36 		1
 3,004 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36 		3
 3,668 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19 		9
 8,902 by rmoretti
Wed, 2014-09-24 09:57
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43 		2
 7,204 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45 		1
 3,115 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04 		1
 2,229 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27 		5
 5,181 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23 		2
 4,176 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29 		3
 6,616 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31 		1
 2,658 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26 		1
 2,448 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46 		3
 3,674 by phanvy
Wed, 2014-07-02 23:32
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44 		1
 6,349 by rmoretti
Tue, 2014-07-01 12:45
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33 		1
 2,440 by rmoretti
Tue, 2014-07-01 12:21
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11 		1
 2,089 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40 		1
 2,140 by nawsad
Wed, 2014-06-25 13:26
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33 		2
 3,109 by phanvy
Sun, 2014-06-22 23:29
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40 		1
 5,669 by yuvals
Sat, 2014-06-21 02:17
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29 		1
 2,110 by nawsad
Fri, 2014-06-20 03:00
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03 		1
 2,270 by nawsad
Fri, 2014-06-20 02:48
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04 		14
 15,278 by phanvy
Wed, 2014-06-18 07:50
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27 		1
 2,713 by rmoretti
Mon, 2014-06-16 08:23
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18 		1
 2,320 by rmoretti
Tue, 2014-06-10 11:34
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47 		1
 2,343 by rmoretti
Mon, 2014-06-09 10:05
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27 		2
 3,593 by rmoretti
Tue, 2014-06-03 11:45
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22 		2
 3,703 by szypanther
Mon, 2014-05-26 22:03
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52 		1
 4,033 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10 		5
 5,697 by rmoretti
Sat, 2014-05-17 14:10
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18 		18
 19,552 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52 		1
 2,284 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53 		3
 4,697 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10 		5
 6,072 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03 		2
 3,139 by Run
Mon, 2014-04-21 06:48
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34 		0
 1,653 by vasek
Mon, 2014-04-21 06:48
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43 		5
 7,580 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06 		2
 3,340 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06 		2
 3,316 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31 		3
 3,686 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30 		3
 4,308 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13 		1
 2,376 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16 		3
 4,499 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04 		3
 5,185 by rmoretti
Mon, 2014-04-21 06:48
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45 		5
 6,069 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03 		1
 2,668 by rmoretti
Mon, 2014-04-21 06:48
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25 		2
 4,848 by Lindsay
Mon, 2014-04-21 06:48
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23 		3
 4,605 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12 		1
 3,158 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16 		1
 3,636 by rmoretti
Mon, 2014-04-21 06:48
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48 		8
 17,282 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22 		5
 6,265 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24 		11
 13,029 by Lindsay
Mon, 2014-04-21 06:48
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28 		2
 3,149 by jtmacd
Mon, 2014-04-21 06:48
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38 		5
 6,899 by rmoretti
Mon, 2014-04-21 06:48
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59 		9
 10,821 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15 		1
 4,143 by rmoretti
Mon, 2014-04-21 06:48
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32 		1
 2,268 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50 		7
 10,232 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09 		3
 3,604 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24 		2
 3,865 by jarek
Mon, 2014-04-21 06:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29 		2
 3,141 by MRH
Mon, 2014-04-21 06:48
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34 		3
 3,982 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25 		1
 3,195 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19 		3
 6,063 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21 		2
 3,961 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50 		3
 5,191 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01 		1
 3,522 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47 		1
 2,218 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38 		3
 3,843 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08 		5
 7,221 by smlewis
Mon, 2014-04-21 06:48
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19 		3
 4,383 by MRH
Mon, 2014-04-21 06:48
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59 		3
 5,779 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13 		8
 7,984 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48 		3
 4,491 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06 		1
 3,915 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21 		4
 5,545 by rosa
Mon, 2014-04-21 06:48
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43 		2
 3,217 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35 		7
 6,972 by rosa
Mon, 2014-04-21 06:48
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35 		1
 2,262 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12 		3
 4,014 by frits
Mon, 2014-04-21 06:48
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42 		3
 3,475 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38 		5
 6,091 by MRH
Mon, 2014-04-21 06:48
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53 		3
 9,314 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21 		2
 2,926 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19 		1
 2,104 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13 		2
 3,632 by ytao
Mon, 2014-04-21 06:48
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07 		1
 2,056 by smlewis
Mon, 2014-04-21 06:48
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22 		2
 3,232 by frits
Mon, 2014-04-21 06:48
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26 		2
 2,880 by banshee
Mon, 2014-04-21 06:48
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55 		26
 30,310 by omirus
Mon, 2014-04-21 06:48
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29 		2
 2,945 by berk
Mon, 2014-04-21 06:48
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00 		3
 4,467 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04 		1
 2,346 by smlewis
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32 		6
 6,272 by fukamitka
Mon, 2014-04-21 06:48
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44 		3
 4,039 by eunwook
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00 		11
 12,818 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56 		1
 2,936 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00 		11
 10,644 by rmoretti
Mon, 2014-04-21 06:47