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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20 		9
 8,956 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07 		5
 6,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58 		5
 5,355 by rpache
Mon, 2014-04-21 06:47
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24 		1
 1,398 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29 		2
 2,944 by berk
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38 		5
 6,090 by MRH
Mon, 2014-04-21 06:48
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48 		2
 3,668 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23 		8
 6,787 by jtmacd
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59 		5
 6,111 by einew
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54 		13
 13,419 by ablakely7
Wed, 2019-09-11 15:33
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56 		0
 871 by jeanramos
Mon, 2020-07-13 00:56
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31 		2
 2,910 by jarod
Mon, 2014-04-21 06:47
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20 		1
 1,708 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18 		2
 2,287 by jalan
Sun, 2020-04-12 08:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17 		0
 1,038 by yinasun
Fri, 2019-07-26 02:17
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08 		1
 1,643 by rmoretti
Mon, 2019-08-26 15:00
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35 		12
 14,827 by Apiwat
Tue, 2014-03-11 09:42
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41 		2
 3,056 by ctaylor
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29 		3
 3,941 by sumukh21
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31 		0
 1,676 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31 		5
 4,928 by matteoferla
Wed, 2021-09-29 01:58
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18 		1
 2,319 by rmoretti
Tue, 2014-06-10 11:34
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43 		4
 4,259 by jtmacd
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22 		5
 5,774 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23 		3
 5,223 by jurkm
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47 		0
 1,764 by abdullah
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21 		1
 2,090 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44 		1
 2,357 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48 		2
 2,659 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54 		0
 906 by Corvin
Wed, 2021-05-19 07:54
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11 		1
 2,088 by rmoretti
Tue, 2014-07-01 12:07
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43 		6
 6,284 by tevang
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06 		0
 2,625 by coxford
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48 		19
 17,891 by pledor
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47 		4
 5,948 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28 		3
 5,423 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55 		4
 4,338 by pardave
Mon, 2014-04-21 06:47
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18 		0
 468 by almeida85
Thu, 2023-05-25 06:18
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25 		8
 10,176 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28 		6
 4,526 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35 		1
 2,284 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33 		1
 3,578 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35 		2
 3,083 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07 		1
 726 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29 		2
 2,121 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55 		0
 1,197 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Methodology Feedback with As(III) and Pb(II) Binding
by rnogy » Mon, 2023-11-06 17:05 		0
 339 by rnogy
Mon, 2023-11-06 17:06
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52 		5
 5,716 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26 		2
 2,651 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29 		2
 3,140 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08 		13
 16,664 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19 		1
 2,134 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07 		1
 2,055 by smlewis
Mon, 2014-04-21 06:48
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58 		12
 5,793 by kwu030
Thu, 2023-05-18 08:31
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32 		6
 7,111 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56 		2
 2,621 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28 		1
 2,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52 		1
 2,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07 		1
 2,221 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54 		13
 11,802 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48 		6
 6,108 by jarod
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39 		10
 11,567 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08 		5
 5,122 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08 		19
 20,722 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34 		3
 4,434 by matteoferla
Sat, 2017-08-05 07:18
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16 		5
 8,097 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44 		1
 1,795 by jkleman
Sat, 2018-04-14 10:55
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39 		2
 3,080 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41 		2
 2,976 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39 		3
 3,681 by rmoretti
Thu, 2015-09-17 12:42
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46 		1
 824 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05 		3
 3,536 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25 		0
 1,461 by jferrie
Mon, 2018-04-23 15:25
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09 		1
 1,646 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53 		1
 2,518 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30 		1
 15,652 by rmoretti
Sat, 2015-09-05 12:10
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47 		1
 1,619 by jkleman
Thu, 2020-01-16 11:05
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39 		25
 25,475 by Gaurav_kumar
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40 		1
 5,668 by yuvals
Sat, 2014-06-21 02:17
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07 		2
 2,184 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59 		9
 10,819 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32 		0
 750 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44 		2
 2,086 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14 		2
 2,032 by rmoretti
Tue, 2021-02-09 13:45
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41 		2
 4,525 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41 		1
 1,163 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30 		1
 3,681 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06 		2
 3,315 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16 		4
 4,652 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03 		1
 3,181 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42 		1
 816 by rmoretti
Tue, 2022-09-06 08:22
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31 		1
 1,955 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59 		1
 4,277 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06 		3
 4,636 by smlewis
Thu, 2016-04-21 16:00
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40 		0
 1,189 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24 		2
 3,864 by jarek
Mon, 2014-04-21 06:48
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43 		1
 1,560 by smlewis
Fri, 2019-06-28 13:56
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33 		0
 613 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19 		6
 5,717 by rmoretti
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40 		1
 2,482 by rmoretti
Fri, 2015-07-03 13:04