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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23 		1
 4,224 by rmoretti
Tue, 2017-06-20 08:48
Normal topic running multiple instances of rosetta
by yiliu » Thu, 2008-01-10 08:39 		2
 3,272 by kosa
Mon, 2014-04-21 06:47
Normal topic -no_filter flag in docking
by banshee » Tue, 2013-05-28 11:58 		2
 4,030 by banshee
Mon, 2014-04-21 06:47
Normal topic -regions
by mdyini » Wed, 2009-11-25 15:35 		0
 2,194 by mdyini
Mon, 2014-04-21 06:47
Normal topic /usr/bin/ld: cannot find -lmpi_cxx
by anusmita_sahoo » Fri, 2010-05-07 10:41 		2
 14,200 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Ab Initio
by vamsi » Fri, 2008-11-21 12:42 		2
 3,890 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sat, 2012-06-16 04:25 		2
 4,033 by kaue
Mon, 2014-04-21 06:47
Normal topic ab initio with restraint
by Elin » Thu, 2008-08-28 18:42 		2
 3,001 by Elin
Mon, 2014-04-21 06:47
Normal topic abinitio
by vamsi » Fri, 2008-11-21 12:21 		0
 1,873 by vamsi
Mon, 2014-04-21 06:47
Normal topic abinitio modeling
by vamsi » Mon, 2008-11-17 12:13 		1
 2,190 by yiliu
Mon, 2014-04-21 06:47
Normal topic about SASA interpretation
by tarajano » Fri, 2008-06-20 10:17 		2
 3,748 by tarajano
Mon, 2014-04-21 06:47
Normal topic About the code.What's the difference between ****.fwd.hh and ****.hh
by Run » Sat, 2013-07-20 23:51 		2
 5,140 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning of UbcH7- E6AP Interface
by suj88 » Mon, 2009-03-23 15:58 		1
 4,265 by kristiankrantz
Mon, 2014-04-21 06:47
Normal topic all-atom modelling and clustering
by danzinho » Fri, 2008-07-25 02:02 		2
 2,833 by danzinho
Mon, 2014-04-21 06:47
Normal topic Barcode constraint file
by rkhayat » Fri, 2009-05-15 16:02 		1
 2,899 by davidk
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32 		1
 3,197 by vanita
Mon, 2014-04-21 06:47
Normal topic build error by MS Visual studio 2008
by jarod » Fri, 2010-05-07 22:45 		1
 5,458 by jarod
Mon, 2014-04-21 06:47
Normal topic Build Problem on 64 bit Gentoo
by spetzjoe » Thu, 2008-11-20 12:24 		3
 5,173 by dberkholz
Mon, 2014-04-21 06:47
Normal topic Building a PDB from a set of internal coordinates.
by jcminerlanl » Mon, 2017-03-06 09:47 		2
 3,696 by rbhatta8
Tue, 2017-03-07 07:22
Normal topic building parallel Rosetta 2.3 on a 64-bit machine
by dwoods » Mon, 2008-10-27 11:21 		0
 1,707 by dwoods
Mon, 2014-04-21 06:47
Normal topic Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!!
by ice_flame » Fri, 2011-11-11 07:53 		4
 5,711 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Can Rosetta Antibody build a good model for a new sequence??
by ice_flame » Fri, 2011-04-22 17:56 		2
 5,742 by Sherpaman
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Thu, 2010-01-07 13:08 		0
 2,274 by wszjzhang
Mon, 2014-04-21 06:47
Normal topic capping termini
by luanna » Mon, 2008-05-12 10:50 		1
 2,568 by yiliu
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10 		1
 3,070 by vanita
Mon, 2014-04-21 06:47
Normal topic Cluster methodology
by TiagoGomes » Wed, 2009-04-29 11:53 		0
 2,343 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic cluster.pl fails to extract best centers
by rmosca » Tue, 2008-12-02 03:10 		1
 2,821 by yiliu
Mon, 2014-04-21 06:47
Normal topic clustering_decoy
by icb_bio » Thu, 2008-05-08 18:34 		14
 11,275 by kosa
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35 		1
 3,200 by Jungi
Mon, 2014-04-21 06:47
Normal topic command lines for rebuilding-and-refinement protocol
by Temsiri » Fri, 2008-08-29 08:54 		2
 2,944 by Temsiri
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38 		1
 3,160 by sid
Mon, 2014-04-21 06:47
Normal topic Compilation Error 1 after 'make gcc' command
by suj88 » Wed, 2009-02-25 14:24 		1
 6,268 by Bob3k
Mon, 2014-04-21 06:47
Normal topic compilation failure in 64-bit mode linux system
by kw8cr » Wed, 2010-02-24 22:21 		1
 4,391 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Compiles fine but seg faults on everything
by mckinneys » Thu, 2008-07-24 12:28 		1
 2,178 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compiling Mpilan option
by TiagoGomes » Tue, 2009-04-21 05:34 		0
 2,039 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta on Intel Macs running Leopard (OS X 10.5)
by pager2 » Tue, 2008-07-08 11:59 		5
 15,447 by rmoretti
Thu, 2014-06-05 11:17
Normal topic Compiling Rosetta++ 3.1 with alternate gcc
by fyros » Thu, 2010-07-22 13:32 		1
 3,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic Computing ddg_binding
by hetu » Mon, 2008-09-29 19:11 		1
 2,656 by yiliu
Mon, 2014-04-21 06:47
Normal topic Consistency of interface DDG calculations
by JuliusSu » Sun, 2014-03-30 21:35 		0
 1,702 by JuliusSu
Sun, 2014-03-30 21:35
Normal topic Constraints on residue size
by yiliu » Thu, 2008-01-10 08:44 		1
 2,094 by yiliu
Mon, 2014-04-21 06:47
Normal topic de novo modeling of a dimer
by kosa » Wed, 2009-08-19 05:55 		1
 3,478 by yangshen
Mon, 2014-04-21 06:47
Normal topic Deb or rpm files?
by tlmcraig » Wed, 2008-08-20 23:24 		0
 1,573 by tlmcraig
Mon, 2014-04-21 06:47
Normal topic Difference between Eres, Ereduce, Enew?
by yiliu » Thu, 2008-01-10 08:48 		1
 2,721 by yiliu
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25 		1
 3,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic distance restrain rosetta 2.3
by sgrigna » Wed, 2009-03-25 08:42 		1
 2,911 by vanita
Mon, 2014-04-21 06:47
Normal topic distributed computing environment support?
by jarod » Sat, 2010-03-13 21:05 		1
 3,381 by smlewis
Mon, 2014-04-21 06:47
Normal topic disulfid bonds
by blaumbaer » Wed, 2008-04-30 10:21 		5
 7,928 by khorvash
Thu, 2017-01-19 15:05
Normal topic disulphides are only sometimes formed
by danzinho » Mon, 2009-01-19 08:42 		1
 2,794 by yiliu
Mon, 2014-04-21 06:47
Normal topic Docking Protocol ERROR
by bwp » Wed, 2009-04-08 08:41 		0
 2,018 by bwp
Mon, 2014-04-21 06:47
Normal topic docking search: first residue centroids, then full atom?
by pshannon » Wed, 2008-09-03 15:46 		1
 2,518 by yiliu
Mon, 2014-04-21 06:47
Normal topic Docking with pose_loops - frustration!
by mchldln » Wed, 2009-06-10 08:44 		2
 3,751 by mchldln
Mon, 2014-04-21 06:47
Normal topic Does any paper descript rosetta2.3's scoring function (fixbb )
by tianbu » Fri, 2012-07-27 14:50 		3
 5,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does rosetta 3.3 have different energy terms from 2.3 (fixbb design)
by Lindsay » Mon, 2012-07-16 13:12 		4
 6,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dunbrack rotamer energy term...
by tsjain » Mon, 2011-06-13 15:19 		6
 11,581 by qlj
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic ERROR:: Can't find starting structure: ../prepack/test.pdb
by tru » Thu, 2008-04-24 07:25 		4
 5,775 by yiliu
Mon, 2014-04-21 06:47
Normal topic Examples in RosettaDock tutorials
by yiliu » Thu, 2008-01-10 08:27 		1
 2,757 by yiliu
Mon, 2014-04-21 06:47
Normal topic extract pdb file from silent file .out
by anusmita_sahoo » Sun, 2010-05-16 23:50 		1
 3,899 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic FAQ
by admin » Mon, 2010-08-30 04:22 		0
 6,281 by admin
Sat, 2015-09-05 12:11
Normal topic flexible backbone design with multiple chains
by lesi » Thu, 2009-06-18 14:57 		2
 4,561 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Flexible-backbone Rosetta design (partial flexibility)
by shirleyzheng » Mon, 2009-05-11 11:27 		1
 3,007 by marthapedraza
Mon, 2014-04-21 06:47
Normal topic Fragment files for incomplet protein
by globalcoco » Sat, 2009-04-18 05:16 		1
 2,901 by vanita
Mon, 2014-04-21 06:47
Normal topic fragment generation - local vs server
by danzinho » Fri, 2008-07-25 02:09 		1
 2,407 by yiliu
Mon, 2014-04-21 06:47
Normal topic fragments library for starting structures having multiple chains
by mdyini » Thu, 2009-06-11 10:34 		1
 3,391 by mdyini
Mon, 2014-04-21 06:47
Normal topic Getting the scorefilter value from a calibration run
by lcavallo » Fri, 2009-03-20 06:18 		0
 2,031 by lcavallo
Mon, 2014-04-21 06:47
Normal topic got here mapping777777 -1 at ~/rosetta/antibody/scripts/ram_blastscript.pl line 10
by wtscrystal » Mon, 2009-05-04 06:08 		0
 2,083 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic GTP-bound proteins
by mbh » Thu, 2008-11-13 11:35 		1
 2,250 by yiliu
Mon, 2014-04-21 06:47
Normal topic Help with flexible backbone design
by neilcifer » Thu, 2008-11-20 10:45 		0
 2,002 by neilcifer
Mon, 2014-04-21 06:47
Normal topic help!!!
by yiliu » Thu, 2008-01-10 08:33 		1
 2,181 by yiliu
Mon, 2014-04-21 06:47
Normal topic how do I repeat relax runs and get scoring functions at every state
by Temsiri » Mon, 2008-11-03 19:42 		3
 3,477 by vanita
Mon, 2014-04-21 06:47
Normal topic How do you refine the native structure?
by yiliu » Thu, 2008-01-10 08:40 		1
 2,471 by yiliu
Mon, 2014-04-21 06:47
Normal topic how do you test if your rosetta.xxx is indeed correctly built?
by tru » Thu, 2008-04-24 08:04 		4
 5,844 by tru
Mon, 2014-04-21 06:47
Normal topic How does Rosetta calculate rms?
by rwn » Thu, 2008-05-15 07:41 		9
 18,018 by rmoretti
Tue, 2014-10-14 08:05
Normal topic how long does it take?
by Piter_ » Thu, 2008-05-15 06:10 		1
 2,184 by Elin
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 00:41 		2
 2,834 by Jeffrey_Chen
Tue, 2014-03-25 23:29
Normal topic How to build a parallel version of rosetta++ (Rosetta2.3.0) ?
by ice_flame » Fri, 2011-03-25 22:20 		0
 2,899 by ice_flame
Mon, 2014-04-21 06:47
Normal topic how to calc the fa_rep in rosetta2.x?
by tianbu » Tue, 2012-07-31 08:38 		1
 4,080 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to change the parameter weight in rosetta 2.3
by Lindsay » Tue, 2012-04-24 14:09 		3
 5,185 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26 		1
 2,392 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to get around no sequence for de novo design?
by neilcifer » Mon, 2008-10-06 15:01 		3
 3,757 by huxz
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to reconstruct full atom structure from silent file
by kosa » Mon, 2008-06-23 07:25 		7
 7,373 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42 		1
 3,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16 		0
 3,938 by hazards
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29 		0
 1,992 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Increase compactness of decoys
by kosa » Sat, 2008-06-21 12:47 		5
 4,858 by kosa
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39 		0
 2,055 by r96631028
Mon, 2014-04-21 06:47
Normal topic Installation report and instructions: Ubuntu 8.10 64 bit
by TamirEr » Mon, 2009-01-12 11:18 		4
 7,389 by chinhsutran
Mon, 2014-04-21 06:47
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41 		2
 5,464 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29 		1
 3,768 by maperalta
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54 		1
 3,061 by Silice
Mon, 2014-04-21 06:47
Normal topic Linux Distros and Settings
by Brev » Tue, 2008-08-19 17:48 		2
 3,922 by sdarnell
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05 		2
 4,774 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Loop modeling with multiple chains
by sonyadave » Tue, 2008-05-06 13:44 		3
 4,927 by sonyadave
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16 		0
 2,356 by joseph
Mon, 2014-04-21 06:47
Normal topic make_fragment
by icb_bio » Tue, 2008-05-06 22:12 		7
 8,459 by aork
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42 		4
 6,153 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46 		1
 3,208 by brspurri
Mon, 2014-04-21 06:47
Normal topic membrane protein docking
by angel » Thu, 2008-10-23 08:50 		2
 3,452 by yiliu
Mon, 2014-04-21 06:47