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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23 		1
 4,225 by rmoretti
Tue, 2017-06-20 08:48
Normal topic working with silent output - mergin, clustering and extracting
by kosa » Thu, 2008-05-15 05:54 		1
 2,555 by yiliu
Mon, 2014-04-21 06:47
Normal topic Why so wried way?
by dikov » Fri, 2010-03-05 04:57 		0
 2,714 by dikov
Mon, 2014-04-21 06:47
Normal topic Why should I do prepack before docking?
by ice_flame » Wed, 2011-11-16 04:12 		2
 4,188 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Why a paralleled Rosetta perform like a normal one?
by ice_flame » Mon, 2011-03-28 22:23 		1
 4,757 by smlewis
Mon, 2014-04-21 06:47
Normal topic Which vall version are make_fragment based on?
by lennylv » Thu, 2009-04-02 05:00 		0
 2,077 by lennylv
Mon, 2014-04-21 06:47
Normal topic what's the meaning of the Ab-Ag Dock with RosettaDock
by huairpan » Thu, 2009-10-15 23:26 		2
 4,525 by huairpan
Mon, 2014-04-21 06:47
Normal topic What's the difference between F and S labeled decoys?
by PaulaBanks » Mon, 2013-08-26 23:44 		1
 2,940 by rmoretti
Mon, 2014-04-21 06:48
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44 		1
 3,093 by smlewis
Mon, 2014-04-21 06:47
Normal topic weighted constraints
by mintseris » Mon, 2014-02-03 15:24 		3
 4,757 by rmoretti
Thu, 2014-02-06 09:06
Normal topic Using dipolar coupling restraints in Rosetta v2.3
by pager2 » Mon, 2010-03-08 14:54 		0
 2,635 by pager2
Mon, 2014-04-21 06:47
Normal topic Using -fibril mode
by jiyongpark.77 » Thu, 2008-11-20 19:18 		1
 2,660 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic use of constraints
by anusmita_sahoo » Thu, 2010-06-10 10:54 		0
 2,268 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Unrecognized Residues in RosettaDock
by mboggara » Sat, 2010-03-20 19:48 		0
 2,431 by mboggara
Mon, 2014-04-21 06:47
Normal topic Unable to determine sequence length from pdb file
by imartins » Tue, 2008-09-30 11:50 		0
 1,593 by imartins
Mon, 2014-04-21 06:47
Normal topic ulfated tyrosine in Rosetta
by yiliu » Thu, 2008-01-10 08:29 		1
 2,335 by yiliu
Mon, 2014-04-21 06:47
Normal topic To apply distance constraint to MULTIPLE residue pairs, what's the format?
by shirleyzheng » Mon, 2009-04-06 10:24 		8
 11,587 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic To add/include unusual amino acids in RosettaDesign
by shirleyzheng » Mon, 2009-07-06 09:34 		0
 2,243 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic Timer
by Temsiri » Sun, 2008-11-09 06:57 		0
 1,545 by Temsiri
Mon, 2014-04-21 06:47
Normal topic the energy terms in fixbb
by tianbu » Sun, 2012-07-29 12:48 		4
 6,879 by tianbu
Mon, 2014-04-21 06:47
Normal topic test.fasta and test.dat files are not available in Rosetta2.3.0
by suj88 » Mon, 2009-03-23 17:14 		1
 2,980 by yiliu
Mon, 2014-04-21 06:47
Normal topic terminus capping
by mbellows » Wed, 2009-10-07 11:16 		1
 3,818 by mboggara
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52 		1
 3,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric design in rosetta3
by sdh » Wed, 2009-07-08 07:30 		1
 3,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic Subclusters - what are they?
by Bob3k » Mon, 2009-06-15 05:58 		0
 2,402 by Bob3k
Mon, 2014-04-21 06:47
Normal topic starting sequence with flexible backbone design
by kmaksim » Mon, 2009-03-23 07:10 		1
 2,773 by vanita
Mon, 2014-04-21 06:47
Normal topic some Q/A about SnugDock
by jarod » Fri, 2010-04-30 20:02 		0
 2,713 by jarod
Mon, 2014-04-21 06:47
Normal topic some posts from old forum
by admin » Tue, 2008-04-22 11:05 		0
 2,490 by admin
Mon, 2014-04-21 06:47
Normal topic Single or multiple decoys from relax?
by kosa » Thu, 2008-05-15 06:11 		2
 2,990 by kosa
Mon, 2014-04-21 06:47
Normal topic Side chain sampling
by mayo » Wed, 2009-04-15 10:14 		1
 3,098 by kaufmann
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44 		1
 3,143 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring Weights
by AndrewBworth » Tue, 2009-07-28 18:08 		1
 3,412 by momeara
Mon, 2014-04-21 06:47
Normal topic run_prof.py
by joseph » Fri, 2010-11-05 14:38 		0
 2,284 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaDock: questions about Fab file and constraints
by lucasimonelli » Thu, 2008-10-09 05:57 		3
 3,674 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDock with loop rebuild HOWTO ?
by lcavallo » Thu, 2009-06-04 09:12 		4
 5,844 by mchldln
Mon, 2014-04-21 06:47
Normal topic RosettaDock and -flex_peptide
by pshannon » Tue, 2008-09-16 17:56 		1
 2,168 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDesign parameters
by gbeckham » Tue, 2008-07-01 18:03 		4
 4,641 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDesign (each run produces the same sequence with many GLY residues )
by shirleyzheng » Wed, 2009-05-13 10:25 		4
 6,450 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody, Fv without terminal 3 residues
by yuich » Sun, 2010-09-26 21:07 		1
 3,617 by aroop
Mon, 2014-04-21 06:47
Normal topic rosetta3 compliation
by sdh » Mon, 2009-05-04 03:16 		0
 1,957 by sdh
Mon, 2014-04-21 06:47
Normal topic Rosetta3 - docking_protocol - fold_tree and number of residues problem
by dsept » Sat, 2009-09-05 11:32 		4
 7,497 by sid
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on MAC OSX 10.5.8
by joseph » Wed, 2010-09-08 10:26 		1
 5,039 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on fedora 9
by akneoh » Mon, 2008-11-17 16:22 		1
 3,096 by Temsiri
Mon, 2014-04-21 06:47
Normal topic Rosetta stops while generating decoys
by jjan » Wed, 2010-01-13 00:45 		0
 2,290 by jjan
Mon, 2014-04-21 06:47
Normal topic rosetta reproducibility
by lcavallo » Thu, 2009-03-05 02:55 		2
 4,002 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Rosetta Loop Modeling error
by mdyini » Tue, 2009-03-31 15:22 		1
 2,734 by vanita
Mon, 2014-04-21 06:47
Normal topic Rosetta hangs while generating decoys
by lcavallo » Sat, 2009-03-07 02:11 		0
 2,249 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Rosetta for Windows
by jp » Wed, 2008-04-23 23:38 		2
 8,046 by yiliu
Mon, 2014-04-21 06:47
Normal topic Rosetta doesn't read the starting structure - solved
by Bob3k » Fri, 2009-02-06 02:00 		4
 6,875 by Bob3k
Mon, 2014-04-21 06:47
Normal topic rosetta antibody model, the option -snug_fit
by jarod » Thu, 2010-04-01 18:30 		0
 2,556 by jarod
Mon, 2014-04-21 06:47
Normal topic Rosetta and Membrane Proteins
by admin » Fri, 2008-04-18 15:26 		1
 2,231 by admin
Mon, 2014-04-21 06:47
Normal topic Rosetta Academic Workshop Series
by xavier » Mon, 2009-01-26 11:50 		0
 2,689 by xavier
Mon, 2014-04-21 06:47
Normal topic Rosetta 2.1.1 troubleshooting
by yiliu » Thu, 2008-01-10 08:51 		1
 2,702 by yiliu
Mon, 2014-04-21 06:47
Normal topic rg cutoff
by yiliu » Thu, 2008-01-10 08:46 		1
 2,306 by yiliu
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01 		1
 3,185 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Re-building protocol crash
by murgantia » Sun, 2011-03-13 05:28 		0
 2,249 by murgantia
Mon, 2014-04-21 06:47
Normal topic Re orienting files from the PDB.
by AndrewBworth » Thu, 2009-06-25 19:09 		1
 3,066 by vanita
Mon, 2014-04-21 06:47
Normal topic random seed
by kosa » Thu, 2008-05-08 03:11 		5
 9,079 by rmoretti
Tue, 2017-06-20 08:47
Normal topic Questions about -fix_natsc and -trim
by mdyini » Thu, 2009-06-11 13:27 		0
 2,194 by mdyini
Mon, 2014-04-21 06:47
Normal topic question about file: cluster_info_silent
by admin » Fri, 2008-04-18 15:19 		4
 4,344 by ndousis
Mon, 2014-04-21 06:47
Normal topic question about antibody modeling and snugdock process option
by iojeong » Sun, 2023-04-16 19:18 		0
 617 by iojeong
Sun, 2023-04-16 19:18
Normal topic program not terminating...
by atoler » Wed, 2009-02-25 06:40 		2
 3,523 by atoler
Mon, 2014-04-21 06:47
Normal topic producing good idealized structures
by lesi » Thu, 2009-06-18 15:06 		3
 5,310 by sid
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21 		1
 3,181 by jjz2009
Mon, 2014-04-21 06:47
Normal topic problems building rosetta 2.3.0 with icc
by lcavallo » Wed, 2009-03-04 05:32 		0
 2,265 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Prepacking structures using RosettaDock on a Windows platform
by suj88 » Fri, 2009-03-13 14:20 		1
 4,049 by suj88
Mon, 2014-04-21 06:47
Normal topic pose_ligand_docking? and constraint file...
by mdyini » Wed, 2009-07-01 20:13 		0
 2,281 by mdyini
Mon, 2014-04-21 06:47
Normal topic Pose Docking
by AndrewBworth » Sat, 2009-08-08 12:50 		2
 4,365 by matchf
Mon, 2014-04-21 06:47
Normal topic pNNMAKE and loops zone file
by yiliu » Thu, 2008-01-10 08:49 		1
 2,218 by yiliu
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24 		1
 3,178 by vanita
Mon, 2014-04-21 06:47
Normal topic N-terminus and loops
by sreiling » Thu, 2009-01-29 08:27 		3
 4,465 by vanita
Mon, 2014-04-21 06:47
Normal topic multiple_processor
by yiliu » Thu, 2008-01-10 08:47 		1
 2,257 by yiliu
Mon, 2014-04-21 06:47
Hot topic multigraft design
by spraha » Wed, 2012-01-11 07:57 		28
 36,074 by Sergey Menis
Mon, 2014-04-21 06:47
Normal topic MPI Rosetta
by pager2 » Fri, 2008-08-01 08:13 		1
 3,356 by yiliu
Mon, 2014-04-21 06:47
Normal topic module reconstruct_PDB_by_index module reconstruct_PDB_by_index
by yiliu » Thu, 2008-01-10 08:30 		1
 2,220 by yiliu
Mon, 2014-04-21 06:47
Normal topic modelling loops and inserted domains
by danzinho » Fri, 2009-01-16 02:14 		6
 7,965 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Missing make options for 64-bit platforms in RosettaBundle-2.3.0.gz
by dean » Fri, 2008-06-06 04:17 		2
 2,879 by rmosca
Mon, 2014-04-21 06:47
Normal topic MinGW build problem
by tlmcraig » Thu, 2008-08-21 12:22 		1
 3,336 by yiliu
Mon, 2014-04-21 06:47
Normal topic membrane protein docking
by angel » Thu, 2008-10-23 08:50 		2
 3,453 by yiliu
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46 		1
 3,209 by brspurri
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42 		4
 6,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragment
by icb_bio » Tue, 2008-05-06 22:12 		7
 8,459 by aork
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16 		0
 2,357 by joseph
Mon, 2014-04-21 06:47
Normal topic Loop modeling with multiple chains
by sonyadave » Tue, 2008-05-06 13:44 		3
 4,928 by sonyadave
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05 		2
 4,775 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Linux Distros and Settings
by Brev » Tue, 2008-08-19 17:48 		2
 3,922 by sdarnell
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54 		1
 3,062 by Silice
Mon, 2014-04-21 06:47
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29 		1
 3,769 by maperalta
Mon, 2014-04-21 06:47
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41 		2
 5,465 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Installation report and instructions: Ubuntu 8.10 64 bit
by TamirEr » Mon, 2009-01-12 11:18 		4
 7,390 by chinhsutran
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39 		0
 2,056 by r96631028
Mon, 2014-04-21 06:47
Normal topic Increase compactness of decoys
by kosa » Sat, 2008-06-21 12:47 		5
 4,859 by kosa
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29 		0
 1,993 by lcavallo
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16 		0
 3,939 by hazards
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42 		1
 3,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to reconstruct full atom structure from silent file
by kosa » Mon, 2008-06-23 07:25 		7
 7,374 by yiliu
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic how to get around no sequence for de novo design?
by neilcifer » Mon, 2008-10-06 15:01 		3
 3,758 by huxz
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26 		1
 2,393 by yiliu
Mon, 2014-04-21 06:47