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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23 		1
 4,225 by rmoretti
Tue, 2017-06-20 08:48
Hot topic multigraft design
by spraha » Wed, 2012-01-11 07:57 		28
 36,074 by Sergey Menis
Mon, 2014-04-21 06:47
Normal topic How does Rosetta calculate rms?
by rwn » Thu, 2008-05-15 07:41 		9
 18,019 by rmoretti
Tue, 2014-10-14 08:05
Normal topic Compiling Rosetta on Intel Macs running Leopard (OS X 10.5)
by pager2 » Tue, 2008-07-08 11:59 		5
 15,448 by rmoretti
Thu, 2014-06-05 11:17
Normal topic /usr/bin/ld: cannot find -lmpi_cxx
by anusmita_sahoo » Fri, 2010-05-07 10:41 		2
 14,201 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic To apply distance constraint to MULTIPLE residue pairs, what's the format?
by shirleyzheng » Mon, 2009-04-06 10:24 		8
 11,587 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Dunbrack rotamer energy term...
by tsjain » Mon, 2011-06-13 15:19 		6
 11,582 by qlj
Mon, 2014-04-21 06:47
Normal topic clustering_decoy
by icb_bio » Thu, 2008-05-08 18:34 		14
 11,276 by kosa
Mon, 2014-04-21 06:47
Normal topic random seed
by kosa » Thu, 2008-05-08 03:11 		5
 9,079 by rmoretti
Tue, 2017-06-20 08:47
Normal topic make_fragment
by icb_bio » Tue, 2008-05-06 22:12 		7
 8,459 by aork
Mon, 2014-04-21 06:47
Normal topic Rosetta for Windows
by jp » Wed, 2008-04-23 23:38 		2
 8,046 by yiliu
Mon, 2014-04-21 06:47
Normal topic modelling loops and inserted domains
by danzinho » Fri, 2009-01-16 02:14 		6
 7,965 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic disulfid bonds
by blaumbaer » Wed, 2008-04-30 10:21 		5
 7,929 by khorvash
Thu, 2017-01-19 15:05
Normal topic Rosetta3 - docking_protocol - fold_tree and number of residues problem
by dsept » Sat, 2009-09-05 11:32 		4
 7,497 by sid
Mon, 2014-04-21 06:47
Normal topic Installation report and instructions: Ubuntu 8.10 64 bit
by TamirEr » Mon, 2009-01-12 11:18 		4
 7,390 by chinhsutran
Mon, 2014-04-21 06:47
Normal topic How to reconstruct full atom structure from silent file
by kosa » Mon, 2008-06-23 07:25 		7
 7,374 by yiliu
Mon, 2014-04-21 06:47
Normal topic the energy terms in fixbb
by tianbu » Sun, 2012-07-29 12:48 		4
 6,879 by tianbu
Mon, 2014-04-21 06:47
Normal topic Rosetta doesn't read the starting structure - solved
by Bob3k » Fri, 2009-02-06 02:00 		4
 6,875 by Bob3k
Mon, 2014-04-21 06:47
Normal topic RosettaDesign (each run produces the same sequence with many GLY residues )
by shirleyzheng » Wed, 2009-05-13 10:25 		4
 6,450 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic FAQ
by admin » Mon, 2010-08-30 04:22 		0
 6,282 by admin
Sat, 2015-09-05 12:11
Normal topic Compilation Error 1 after 'make gcc' command
by suj88 » Wed, 2009-02-25 14:24 		1
 6,269 by Bob3k
Mon, 2014-04-21 06:47
Normal topic Does rosetta 3.3 have different energy terms from 2.3 (fixbb design)
by Lindsay » Mon, 2012-07-16 13:12 		4
 6,178 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42 		4
 6,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic how do you test if your rosetta.xxx is indeed correctly built?
by tru » Thu, 2008-04-24 08:04 		4
 5,845 by tru
Mon, 2014-04-21 06:47
Normal topic RosettaDock with loop rebuild HOWTO ?
by lcavallo » Thu, 2009-06-04 09:12 		4
 5,844 by mchldln
Mon, 2014-04-21 06:47
Normal topic ERROR:: Can't find starting structure: ../prepack/test.pdb
by tru » Thu, 2008-04-24 07:25 		4
 5,776 by yiliu
Mon, 2014-04-21 06:47
Normal topic Can Rosetta Antibody build a good model for a new sequence??
by ice_flame » Fri, 2011-04-22 17:56 		2
 5,743 by Sherpaman
Mon, 2014-04-21 06:47
Normal topic Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!!
by ice_flame » Fri, 2011-11-11 07:53 		4
 5,712 by ice_flame
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41 		2
 5,465 by rmoretti
Mon, 2014-04-21 06:48
Normal topic build error by MS Visual studio 2008
by jarod » Fri, 2010-05-07 22:45 		1
 5,459 by jarod
Mon, 2014-04-21 06:47
Normal topic producing good idealized structures
by lesi » Thu, 2009-06-18 15:06 		3
 5,310 by sid
Mon, 2014-04-21 06:47
Normal topic Does any paper descript rosetta2.3's scoring function (fixbb )
by tianbu » Fri, 2012-07-27 14:50 		3
 5,245 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to change the parameter weight in rosetta 2.3
by Lindsay » Tue, 2012-04-24 14:09 		3
 5,186 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Build Problem on 64 bit Gentoo
by spetzjoe » Thu, 2008-11-20 12:24 		3
 5,174 by dberkholz
Mon, 2014-04-21 06:47
Normal topic About the code.What's the difference between ****.fwd.hh and ****.hh
by Run » Sat, 2013-07-20 23:51 		2
 5,141 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta-2.3.0 build on MAC OSX 10.5.8
by joseph » Wed, 2010-09-08 10:26 		1
 5,039 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling with multiple chains
by sonyadave » Tue, 2008-05-06 13:44 		3
 4,928 by sonyadave
Mon, 2014-04-21 06:47
Normal topic Increase compactness of decoys
by kosa » Sat, 2008-06-21 12:47 		5
 4,859 by kosa
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05 		2
 4,775 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Why a paralleled Rosetta perform like a normal one?
by ice_flame » Mon, 2011-03-28 22:23 		1
 4,757 by smlewis
Mon, 2014-04-21 06:47
Normal topic weighted constraints
by mintseris » Mon, 2014-02-03 15:24 		3
 4,757 by rmoretti
Thu, 2014-02-06 09:06
Normal topic RosettaDesign parameters
by gbeckham » Tue, 2008-07-01 18:03 		4
 4,641 by yiliu
Mon, 2014-04-21 06:47
Normal topic flexible backbone design with multiple chains
by lesi » Thu, 2009-06-18 14:57 		2
 4,562 by lqzhang
Mon, 2014-04-21 06:47
Normal topic what's the meaning of the Ab-Ag Dock with RosettaDock
by huairpan » Thu, 2009-10-15 23:26 		2
 4,525 by huairpan
Mon, 2014-04-21 06:47
Normal topic N-terminus and loops
by sreiling » Thu, 2009-01-29 08:27 		3
 4,465 by vanita
Mon, 2014-04-21 06:47
Normal topic compilation failure in 64-bit mode linux system
by kw8cr » Wed, 2010-02-24 22:21 		1
 4,392 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Pose Docking
by AndrewBworth » Sat, 2009-08-08 12:50 		2
 4,365 by matchf
Mon, 2014-04-21 06:47
Normal topic question about file: cluster_info_silent
by admin » Fri, 2008-04-18 15:19 		4
 4,344 by ndousis
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Alanine Scanning of UbcH7- E6AP Interface
by suj88 » Mon, 2009-03-23 15:58 		1
 4,266 by kristiankrantz
Mon, 2014-04-21 06:47
Normal topic Why should I do prepack before docking?
by ice_flame » Wed, 2011-11-16 04:12 		2
 4,188 by ice_flame
Mon, 2014-04-21 06:47
Normal topic how to calc the fa_rep in rosetta2.x?
by tianbu » Tue, 2012-07-31 08:38 		1
 4,081 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Prepacking structures using RosettaDock on a Windows platform
by suj88 » Fri, 2009-03-13 14:20 		1
 4,049 by suj88
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sat, 2012-06-16 04:25 		2
 4,034 by kaue
Mon, 2014-04-21 06:47
Normal topic -no_filter flag in docking
by banshee » Tue, 2013-05-28 11:58 		2
 4,031 by banshee
Mon, 2014-04-21 06:47
Normal topic rosetta reproducibility
by lcavallo » Thu, 2009-03-05 02:55 		2
 4,002 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta++ 3.1 with alternate gcc
by fyros » Thu, 2010-07-22 13:32 		1
 3,995 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16 		0
 3,939 by hazards
Mon, 2014-04-21 06:47
Normal topic Linux Distros and Settings
by Brev » Tue, 2008-08-19 17:48 		2
 3,922 by sdarnell
Mon, 2014-04-21 06:47
Normal topic extract pdb file from silent file .out
by anusmita_sahoo » Sun, 2010-05-16 23:50 		1
 3,900 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Ab Initio
by vamsi » Fri, 2008-11-21 12:42 		2
 3,891 by rmoretti
Mon, 2014-04-21 06:47
Normal topic terminus capping
by mbellows » Wed, 2009-10-07 11:16 		1
 3,818 by mboggara
Mon, 2014-04-21 06:47
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29 		1
 3,769 by maperalta
Mon, 2014-04-21 06:47
Normal topic how to get around no sequence for de novo design?
by neilcifer » Mon, 2008-10-06 15:01 		3
 3,758 by huxz
Mon, 2014-04-21 06:47
Normal topic Docking with pose_loops - frustration!
by mchldln » Wed, 2009-06-10 08:44 		2
 3,752 by mchldln
Mon, 2014-04-21 06:47
Normal topic about SASA interpretation
by tarajano » Fri, 2008-06-20 10:17 		2
 3,749 by tarajano
Mon, 2014-04-21 06:47
Normal topic Building a PDB from a set of internal coordinates.
by jcminerlanl » Mon, 2017-03-06 09:47 		2
 3,697 by rbhatta8
Tue, 2017-03-07 07:22
Normal topic RosettaDock: questions about Fab file and constraints
by lucasimonelli » Thu, 2008-10-09 05:57 		3
 3,674 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody, Fv without terminal 3 residues
by yuich » Sun, 2010-09-26 21:07 		1
 3,617 by aroop
Mon, 2014-04-21 06:47
Normal topic program not terminating...
by atoler » Wed, 2009-02-25 06:40 		2
 3,523 by atoler
Mon, 2014-04-21 06:47
Normal topic de novo modeling of a dimer
by kosa » Wed, 2009-08-19 05:55 		1
 3,479 by yangshen
Mon, 2014-04-21 06:47
Normal topic how do I repeat relax runs and get scoring functions at every state
by Temsiri » Mon, 2008-11-03 19:42 		3
 3,478 by vanita
Mon, 2014-04-21 06:47
Normal topic membrane protein docking
by angel » Thu, 2008-10-23 08:50 		2
 3,453 by yiliu
Mon, 2014-04-21 06:47
Normal topic Scoring Weights
by AndrewBworth » Tue, 2009-07-28 18:08 		1
 3,412 by momeara
Mon, 2014-04-21 06:47
Normal topic fragments library for starting structures having multiple chains
by mdyini » Thu, 2009-06-11 10:34 		1
 3,392 by mdyini
Mon, 2014-04-21 06:47
Normal topic distributed computing environment support?
by jarod » Sat, 2010-03-13 21:05 		1
 3,382 by smlewis
Mon, 2014-04-21 06:47
Normal topic MPI Rosetta
by pager2 » Fri, 2008-08-01 08:13 		1
 3,356 by yiliu
Mon, 2014-04-21 06:47
Normal topic MinGW build problem
by tlmcraig » Thu, 2008-08-21 12:22 		1
 3,336 by yiliu
Mon, 2014-04-21 06:47
Normal topic symmetric design in rosetta3
by sdh » Wed, 2009-07-08 07:30 		1
 3,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic running multiple instances of rosetta
by yiliu » Thu, 2008-01-10 08:39 		2
 3,273 by kosa
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52 		1
 3,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46 		1
 3,209 by brspurri
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35 		1
 3,201 by Jungi
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32 		1
 3,198 by vanita
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01 		1
 3,185 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21 		1
 3,181 by jjz2009
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24 		1
 3,178 by vanita
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42 		1
 3,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38 		1
 3,161 by sid
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44 		1
 3,143 by smlewis
Mon, 2014-04-21 06:47
Normal topic Side chain sampling
by mayo » Wed, 2009-04-15 10:14 		1
 3,098 by kaufmann
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on fedora 9
by akneoh » Mon, 2008-11-17 16:22 		1
 3,096 by Temsiri
Mon, 2014-04-21 06:47
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44 		1
 3,093 by smlewis
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25 		1
 3,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10 		1
 3,071 by vanita
Mon, 2014-04-21 06:47
Normal topic Re orienting files from the PDB.
by AndrewBworth » Thu, 2009-06-25 19:09 		1
 3,066 by vanita
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54 		1
 3,062 by Silice
Mon, 2014-04-21 06:47
Normal topic Flexible-backbone Rosetta design (partial flexibility)
by shirleyzheng » Mon, 2009-05-11 11:27 		1
 3,008 by marthapedraza
Mon, 2014-04-21 06:47
Normal topic ab initio with restraint
by Elin » Thu, 2008-08-28 18:42 		2
 3,002 by Elin
Mon, 2014-04-21 06:47