-in
	-file
		-s 'intermediate_files/concatenated_files/6WNP_Boceprevir-from6WNP_Boceprevir-from6WNP_0578.pdb'
		-extra_res_fa intermediate_files/mol2params_outputs/Boceprevir_6WNP_nocom.params
-parser
	-protocol intermediate_files/xml_files/6WNP_GAdock.xml
	-script_vars runmode=dockrigid
-overwrite
-corrections
	-gen_potential true
-crystal_refine 
-scale_rb 10.0 
-score::hb_don_strength hbdon_GENERIC_SC:1.45 
-score::hb_acc_strength hbacc_GENERIC_SP2SC:1.19 
-score::hb_acc_strength hbacc_GENERIC_SP3SC:1.19 
-score::hb_acc_strength hbacc_GENERIC_RINGSC:1.19 
-no_autogen_cart_improper
-out:mute core basic protocols.relax
-out:path:all outputs/6WNP_raw/GAdock