-in:file:s 7BR3_PA.pdb # Additional options related to membrane-specific movers and scoring -mp:setup:spanfiles 7BR3_PA.span -mp:scoring:hbond -packing:pack_missing_sidechains 0 #Docking options -docking -partners A_B -dock_pert 3 8 -dock_mcm_trans_magnitude 0.1 -dock_mcm_rot_magnitude 5.0 # Output options -out:file:scorefile docking_scores.sc