RosettaCommons - confirmed

http://www.ncbi.nlm.nih.gov/pubmed/?term=26325167

An Integrated Framework Advancing Membrane Protein Modeling and Design.

Sun, 13 Sep 2015 07:54:22 +0000

Authors:

Alford RF, Koehler Leman J, Weitzner BD, Duran AM, Tilley DC, Elazar A, Gray JJ

Link to article:

Volume:

Year:

2015

Source:

PLoS Comput Biol

Pages:

e1004398

Lab:

Gray

Publication Subject:

Membrane Structure Prediction

Publication Type:

PubMed ID:

26325167

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=26335199

Large scale determination of previously unsolved protein structures using evolutionary information.

Sun, 13 Sep 2015 07:52:27 +0000

Authors:

Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D

Link to article:

Volume:

Year:

2015

Source:

Elife

Pages:

Lab:

Baker

Publication Subject:

Abinitio Modeling

Publication Type:

PubMed ID:

26335199

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=26335248

A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design.

Sun, 13 Sep 2015 07:49:40 +0000

Authors:

O Conchuir S, Barlow KA, Pache RA, Ollikainen N, Kundert K, O'Meara MJ, Smith CA, Kortemme T

Link to article:

Volume:

Year:

2015

Source:

PLoS One

Pages:

e0130433

Lab:

Kortemme

Publication Subject:

Servers & Related Software

Publication Type:

PubMed ID:

26335248

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23505360

Druggable protein interaction sites are more predisposed to surface pocket formation than the rest of the protein surface.

Sun, 22 Mar 2015 01:34:32 +0000

Authors:

Johnson DK, Karanicolas J

Link to article:

Volume:

Year:

2013

Source:

PLoS Comput Biol

Pages:

e1002951

Lab:

Publication Subject:

Other Rosetta Papers

Publication Type:

Method

PubMed ID:

23505360

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23563512

Effect of single-point mutations on the stability and immunogenicity of a recombinant ricin A chain subunit vaccine antigen.

Sun, 22 Mar 2015 01:33:54 +0000

Authors:

Thomas JC, O'Hara JM, Hu L, Gao FP, Joshi SB, Volkin DB, Brey RN, Fang J, Karanicolas J, Mantis NJ, Middaugh CR

Link to article:

Volume:

Year:

2013

Source:

Hum Vaccin Immunother

Pages:

744-52

Lab:

Publication Subject:

Protein Design

Publication Type:

PubMed ID:

23563512

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23976948

Fast docking on graphics processing units via Ray-Casting.

Sun, 22 Mar 2015 01:33:18 +0000

Authors:

Khar KR, Goldschmidt L, Karanicolas J

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e70661

Lab:

Publication Subject:

Ligand Docking

Publication Type:

Method

PubMed ID:

23976948

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24313858

The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation.

Sun, 22 Mar 2015 01:31:55 +0000

Authors:

Xia Y, DiPrimio N, Keppel TR, Vo B, Fraser K, Battaile KP, Egan C, Bystroff C, Lovell S, Weis DD, Anderson JC, Karanicolas J

Link to article:

Volume:

135

Year:

2013

Source:

J Am Chem Soc

Pages:

18840-9

Lab:

Publication Subject:

Protein Design

Publication Type:

PubMed ID:

24313858

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25706586

Selectivity by small-molecule inhibitors of protein interactions can be driven by protein surface fluctuations.

Sun, 22 Mar 2015 01:31:29 +0000

Authors:

Johnson DK, Karanicolas J

Link to article:

Volume:

Year:

2015

Source:

PLoS Comput Biol

Pages:

e1004081

Lab:

Publication Subject:

Other Rosetta Papers

Publication Type:

Method

PubMed ID:

25706586

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23558036

An accurate binding interaction model in de novo computational protein design of interactions: if you build it, they will bind.

Fri, 20 Mar 2015 16:24:00 +0000

Authors:

London N, Ambroggio X

Link to article:

Volume:

185

Year:

2014

Source:

J Struct Biol

Pages:

136-46

Lab:

RDG

Publication Subject:

NONE

Publication Type:

Review

PubMed ID:

23558036

Status: