RosettaCommons - NONE

Structure-based design of supercharged, highly thermoresistant antibodies.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Miklos AE, Kluwe C, Der BS, Pai S, Sircar A, Hughes RA, Berrondo M, Xu J, Codrea V, Buckley PE, Calm AM, Welsh HS, Warner CR, Zacharko MA, Carney JP, Gray JJ, Georgiou G, Kuhlman B, Ellington AD

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22520751

Volume:

Year:

2012

Source:

Chem Biol

Pages:

449-55

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

22520751

Status:

confirmed

Supertertiary structure of the MAGUK core from PSD-95.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Zhang J, Lewis SM, Kuhlman B, Lee AL

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23395180

Volume:

Year:

2013

Source:

Structure

Pages:

402-13

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

23395180

Status:

confirmed

The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Carter CW Jr, Li L, Weinreb V, Collier M, Gonzalez-Rivera K, Jimenez-Rodriguez M, Erdogan O, Kuhlman B, Ambroggio X, Williams T, Chandrasekharan SN

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24927791

Volume:

Year:

2014

Source:

Biol Direct

Pages:

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

24927791

Status:

confirmed

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=15287974

Volume:

Year:

2004

Source:

Genome Biol

Pages:

R52

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

15287974

Status:

confirmed

The plant proteome folding project: structure and positive selection in plant protein families.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Pentony MM, Winters P, Penfold-Brown D, Drew K, Narechania A, DeSalle R, Bonneau R, Purugganan MD

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22345424

Volume:

Year:

2012

Source:

Genome Biol Evol

Pages:

360-71

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

22345424

Status:

confirmed

Improved stability and half-life of fluorinated phosphotriesterase using Rosetta.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Yang CY, Renfrew PD, Olsen AJ, Zhang M, Yuvienco C, Bonneau R, Montclare JK

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25066940

Volume:

Year:

2014

Source:

Chembiochem

Pages:

1761-4

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

25066940

Status:

confirmed

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Adams PD, Baker D, Brunger AT, Das R, DiMaio F, Read RJ, Richardson DC, Richardson JS, Terwilliger TC

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23451892

Volume:

Year:

2013

Source:

Annu Rev Biophys

Pages:

265-87

Lab:

NONE

Publication Subject:

Modeling With Experimental Constraints

Publication Type:

Review

PubMed ID:

23451892

Status:

confirmed

[Expression in Escherichia coli, purification and enzymatic properties of chicken aminopeptidase H].

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Lai Q, Liu S, Lu W, Chen L, Nishimura T, Rao P

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=18589812

Volume:

Year:

2008

Source:

Sheng Wu Gong Cheng Xue Bao

Pages:

381-6

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

18589812

Status:

rejected

2.1 and 1.8 A average C(alpha) RMSD structure predictions on two small proteins, HP-36 and s15.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Lee MR, Baker D, Kollman PA

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=11456657

Volume:

123

Year:

2001

Source:

J Am Chem Soc

Pages:

1040-6

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

11456657

Status:

pending

Molecular dynamics in the endgame of protein structure prediction.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Lee MR, Tsai J, Baker D, Kollman PA

Link to article:

http://www.ncbi.nlm.nih.gov/pubmed/?term=11800566

Volume:

313

Year:

2001

Source:

J Mol Biol

Pages:

417-30

Lab:

NONE

Publication Subject:

NONE

Publication Type:

NONE

PubMed ID:

11800566

Status:

pending