RosettaCommons - NONE

Publication Subject:

Publication Type:

PubMed ID:

25866491

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23558036

An accurate binding interaction model in de novo computational protein design of interactions: if you build it, they will bind.

Fri, 20 Mar 2015 16:24:00 +0000

Authors:

London N, Ambroggio X

Link to article:

Volume:

185

Year:

2014

Source:

J Struct Biol

Pages:

136-46

Lab:

RDG

Publication Subject:

Publication Type:

Review

PubMed ID:

23558036

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24773016

Metals in protein-protein interfaces.

Fri, 20 Mar 2015 16:23:17 +0000

Authors:

Song WJ, Sontz PA, Ambroggio XI, Tezcan FA

Link to article:

Volume:

Year:

2014

Source:

Annu Rev Biophys

Pages:

409-31

Lab:

RDG

Publication Subject:

Publication Type:

Review

PubMed ID:

24773016

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25707030

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D

Link to article:

Volume:

Year:

2015

Source:

Nat Methods

Pages:

Lab:

Baker

Publication Subject:

Publication Type:

PubMed ID:

25707030

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25451037

A general computational approach for repeat protein design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D

Link to article:

Volume:

427

Year:

2015

Source:

J Mol Biol

Pages:

563-75

Lab:

Baker

Publication Subject:

Publication Type:

PubMed ID:

25451037

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23741319

Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Kluwe C, Miklos AE, Jacak R, Lyskov S, Gray JJ, Georgiou G, Ellington AD, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e64363

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23741319

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23504819

Combined computational design of a zinc-binding site and a protein-protein interaction: one open zinc coordination site was not a robust hotspot for de novo ubiquitin binding.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Jha RK, Lewis SM, Thompson PM, Guntas G, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

Proteins

Pages:

1245-55

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23504819

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23422428

Scientific benchmarks for guiding macromolecular energy function improvement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, Baker D, Kuhlman B

Link to article:

Volume:

523

Year:

2013

Source:

Methods Enzymol

Pages:

109-43

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23422428

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22223219

Computational protein design with explicit consideration of surface hydrophobic patches.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Jacak R, Leaver-Fay A, Kuhlman B

Link to article:

Volume:

Year:

2012

Source:

Proteins

Pages:

825-38

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22223219

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22520751

Structure-based design of supercharged, highly thermoresistant antibodies.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Miklos AE, Kluwe C, Der BS, Pai S, Sircar A, Hughes RA, Berrondo M, Xu J, Codrea V, Buckley PE, Calm AM, Welsh HS, Warner CR, Zacharko MA, Carney JP, Gray JJ, Georgiou G, Kuhlman B, Ellington AD

Link to article:

Volume:

Year:

2012

Source:

Chem Biol

Pages:

449-55

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22520751

Status: