RosettaCommons - NONE

Publication Subject:

Publication Type:

PubMed ID:

25866491

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23139141

A comparison of successful and failed protein interface designs highlights the challenges of designing buried hydrogen bonds.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Stranges PB, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

Protein Sci

Pages:

74-82

Lab:

Publication Subject:

Protein Design

Publication Type:

PubMed ID:

23139141

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25707030

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D

Link to article:

Volume:

Year:

2015

Source:

Nat Methods

Pages:

Lab:

Baker

Publication Subject:

Publication Type:

PubMed ID:

25707030

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25451037

A general computational approach for repeat protein design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D

Link to article:

Volume:

427

Year:

2015

Source:

J Mol Biol

Pages:

563-75

Lab:

Baker

Publication Subject:

Publication Type:

PubMed ID:

25451037

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23741319

Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Kluwe C, Miklos AE, Jacak R, Lyskov S, Gray JJ, Georgiou G, Ellington AD, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e64363

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23741319

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23504819

Combined computational design of a zinc-binding site and a protein-protein interaction: one open zinc coordination site was not a robust hotspot for de novo ubiquitin binding.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Jha RK, Lewis SM, Thompson PM, Guntas G, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

Proteins

Pages:

1245-55

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23504819

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23422428

Scientific benchmarks for guiding macromolecular energy function improvement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, Baker D, Kuhlman B

Link to article:

Volume:

523

Year:

2013

Source:

Methods Enzymol

Pages:

109-43

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23422428

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22223219

Computational protein design with explicit consideration of surface hydrophobic patches.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Jacak R, Leaver-Fay A, Kuhlman B

Link to article:

Volume:

Year:

2012

Source:

Proteins

Pages:

825-38

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22223219

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22520751

Structure-based design of supercharged, highly thermoresistant antibodies.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Miklos AE, Kluwe C, Der BS, Pai S, Sircar A, Hughes RA, Berrondo M, Xu J, Codrea V, Buckley PE, Calm AM, Welsh HS, Warner CR, Zacharko MA, Carney JP, Gray JJ, Georgiou G, Kuhlman B, Ellington AD

Link to article:

Volume:

Year:

2012

Source:

Chem Biol

Pages:

449-55

Lab: