RosettaCommons - Method

PubMed ID:

23505360

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23976948

Fast docking on graphics processing units via Ray-Casting.

Sun, 22 Mar 2015 01:33:18 +0000

Authors:

Khar KR, Goldschmidt L, Karanicolas J

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e70661

Lab:

Karanicolas

Publication Subject:

Ligand Docking

Publication Type:

PubMed ID:

23976948

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25706586

Selectivity by small-molecule inhibitors of protein interactions can be driven by protein surface fluctuations.

Sun, 22 Mar 2015 01:31:29 +0000

Authors:

Johnson DK, Karanicolas J

Link to article:

Volume:

Year:

2015

Source:

PLoS Comput Biol

Pages:

e1004081

Lab:

Karanicolas

Publication Subject:

Other Rosetta Papers

Publication Type:

PubMed ID:

25706586

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24244128

Computational protein design quantifies structural constraints on amino acid covariation.

Sun, 15 Mar 2015 19:10:18 +0000

Authors:

Ollikainen N, Kortemme T

Link to article:

Volume:

Year:

2013

Source:

PLoS Comput Biol

Pages:

e1003313

Lab:

Kortemme

Publication Subject:

Protein Design

Publication Type:

PubMed ID:

24244128

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24069194

Cross-link guided molecular modeling with ROSETTA.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Kahraman A, Herzog F, Leitner A, Rosenberger G, Aebersold R, Malmstrom L

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e73411

Lab:

Malmstrom

Publication Subject:

Protein Docking

Publication Type:

PubMed ID:

24069194

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23869206

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e67051

Lab:

Bonneau

Publication Subject:

NONE

Publication Type:

PubMed ID:

23869206

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22109276

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Kladwang W, VanLang CC, Cordero P, Das R

Link to article:

Volume:

Year:

2011

Source:

Nat Chem

Pages:

954-62

Lab:

Publication Subject:

RNA

Publication Type:

PubMed ID:

22109276

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22143768

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Sripakdeevong P, Kladwang W, Das R

Link to article:

Volume:

108

Year:

2011

Source:

Proc Natl Acad Sci U S A

Pages:

20573-8

Lab:

Publication Subject:

RNA

Publication Type:

PubMed ID:

22143768

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23202432

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Chou FC, Sripakdeevong P, Dibrov SM, Hermann T, Das R

Link to article:

Volume:

Year:

2013

Source:

Nat Methods

Pages:

74-6

Lab:

Publication Subject:

RNA

Publication Type:

PubMed ID:

23202432

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24204571

Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Das R

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e74830

Lab:

Publication Subject:

Loop Modeling

Publication Type:

PubMed ID:

24204571

Status: