RosettaCommons - Baker

Publication Subject:

Abinitio Modeling

Publication Type:

Application

PubMed ID:

26335199

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25707030

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D

Link to article:

Volume:

Year:

2015

Source:

Nat Methods

Pages:

Lab:

Publication Subject:

Publication Type:

PubMed ID:

25707030

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25451037

A general computational approach for repeat protein design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D

Link to article:

Volume:

427

Year:

2015

Source:

J Mol Biol

Pages:

563-75

Lab:

Publication Subject:

Publication Type:

PubMed ID:

25451037

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=12945051

An improved protein decoy set for testing energy functions for protein structure prediction.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Tsai J, Bonneau R, Morozov AV, Kuhlman B, Rohl CA, Baker D

Link to article:

Volume:

Year:

2003

Source:

Proteins

Pages:

76-87

Lab:

Publication Subject:

Publication Type:

PubMed ID:

12945051

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=18410248

Macromolecular modeling with rosetta.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Das R, Baker D

Link to article:

Volume:

Year:

2008

Source:

Annu Rev Biochem

Pages:

363-82

Lab:

Publication Subject:

Publication Type:

PubMed ID:

18410248

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=11237627

Prospects for ab initio protein structural genomics.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Simons KT, Strauss C, Baker D

Link to article:

Volume:

306

Year:

2001

Source:

J Mol Biol

Pages:

1191-9

Lab:

Publication Subject:

Publication Type:

PubMed ID:

11237627

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=15063647

Protein structure prediction using Rosetta.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Rohl CA, Strauss CE, Misura KM, Baker D

Link to article:

Volume:

383

Year:

2004

Source:

Methods Enzymol

Pages:

66-93

Lab:

Publication Subject:

Publication Type:

PubMed ID:

15063647

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=15103629

Modeling structurally variable regions in homologous proteins with rosetta.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Rohl CA, Strauss CE, Chivian D, Baker D

Link to article:

Volume:

Year:

2004

Source:

Proteins

Pages:

656-77

Lab:

Publication Subject:

Publication Type:

PubMed ID:

15103629

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=20131376

Feature space resampling for protein conformational search.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Blum B, Jordan MI, Baker D

Link to article:

Volume:

Year:

2010

Source:

Proteins

Pages:

1583-93

Lab:

Publication Subject:

Publication Type:

PubMed ID:

20131376

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=21532589

Improved molecular replacement by density- and energy-guided protein structure optimization.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwai H, Pokkuluri PR, Baker D

Link to article:

Volume:

473

Year:

2011

Source:

Nature

Pages:

540-3

Lab:

Publication Subject:

Publication Type:

PubMed ID:

21532589

Status: