RosettaCommons - Das

Publication Subject:

Publication Type:

Review

PubMed ID:

25726460

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=21625446

Four small puzzles that Rosetta doesn't solve.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Das R

Link to article:

Volume:

Year:

2011

Source:

PLoS One

Pages:

e20044

Lab:

Publication Subject:

Abinitio Modeling

Publication Type:

Application

PubMed ID:

21625446

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22109276

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Kladwang W, VanLang CC, Cordero P, Das R

Link to article:

Volume:

Year:

2011

Source:

Nat Chem

Pages:

954-62

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22109276

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22143768

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Sripakdeevong P, Kladwang W, Das R

Link to article:

Volume:

108

Year:

2011

Source:

Proc Natl Acad Sci U S A

Pages:

20573-8

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22143768

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22192063

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Kladwang W, Chou FC, Das R

Link to article:

Volume:

134

Year:

2012

Source:

J Am Chem Soc

Pages:

1404-7

Lab:

Publication Subject:

Publication Type:

Application

PubMed ID:

22192063

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23202432

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Chou FC, Sripakdeevong P, Dibrov SM, Hermann T, Das R

Link to article:

Volume:

Year:

2013

Source:

Nat Methods

Pages:

74-6

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23202432

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24204571

Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Das R

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e74830

Lab:

Publication Subject:

Loop Modeling

Publication Type:

PubMed ID:

24204571

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24584194

Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R

Link to article:

Volume:

Year:

2014

Source:

Nat Methods

Pages:

413-6

Lab:

Publication Subject:

Publication Type:

PubMed ID:

24584194

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23717507

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Lyskov S, Chou FC, Conchuir SO, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e63906

Lab: