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<title>RosettaCommons - Gray</title>
<link/>https://www.rosettacommons.org/category/publication-lab/gray
 <description></description>
<language>en</language>
<item>
<title>Postdoc positions in protein docking</title>
<link/>https://www.rosettacommons.org/node/10182
 <description>&lt;div class="field field-name-body field-type-text-with-summary field-label-hidden"&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;div class="tex2jax"&gt;&lt;p&gt;
	The Gray lab at Johns Hopkins University is seeking postdocs to develop computational methods to predict and design protein interactions. Our lab co-develops the Rosetta suite for biomolecular structure prediction and design, including leading the development of RosettaDock, RosettaAntibody, RosettaCarbohydrate, RosettaMP (membrane proteins), and the ROSIE server which performs thousands of modeling jobs per year for the scientific community.  Recent papers include studies of structures of antibody repertoires, novel flexible-backbone docking algorithms, and collaborative applications in bone development, cancer, heart disease, and Celiac disease.
&lt;/p&gt;

&lt;p&gt;
	We have several open projects including:
&lt;/p&gt;

&lt;ul&gt;&lt;li&gt;
		Development of protocols to predict and probe glycosyl transfer,
	&lt;/li&gt;
	&lt;li&gt;
		Development of algorithms for docking of single-chain antibodies leveraging HX-MS data,
	&lt;/li&gt;
	&lt;li&gt;
		Prediction of therapeutic antibody aggregation, and
	&lt;/li&gt;
	&lt;li&gt;
		Development of multimodal flexible-backbone docking methods.
	&lt;/li&gt;
&lt;/ul&gt;&lt;p&gt;
	 
&lt;/p&gt;

&lt;p&gt;
	I also have an opportunity to help develop a PyRosetta workshop and training materials.  Ideal for someone with an interest in outreach or teaching, perhaps with an interest in academics at an undergrad-focused institution.  This work is likely to be 50% effort, with the rest going into one of the research topics. 
&lt;/p&gt;

&lt;p&gt;
	We seek candidates with diverse backgrounds and we foster an inclusive lab community.  The ideal candidate has a PhD in chemical engineering, bioengineering, biophysics or a related field, experience in computational methods development and protein engineering research, and a passion for scientific discovery.
&lt;/p&gt;

&lt;p&gt;
	Please send a CV and a brief cover letter summarizing your background and interests to Prof. Jeff Gray at &lt;a href="mailto:jgray@jhu.edu"&gt;jgray@jhu.edu&lt;/a&gt;.
&lt;/p&gt;

&lt;p&gt;
	More information on the lab at &lt;a href="https://graylab.jhu.edu/"&gt;https://graylab.jhu.edu&lt;/a&gt;. 
&lt;/p&gt;
&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Thu, 15 Feb 2018 12:14:04 +0000</pubdate>
<dc:creator>admin</dc:creator>
<guid ispermalink="false">10182 at https://www.rosettacommons.org</guid>
<comments>https://www.rosettacommons.org/node/10182#comments</comments>
</item>
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<title>An Integrated Framework Advancing Membrane Protein Modeling and Design.</title>
<link/>https://www.rosettacommons.org/node/9512
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Alford RF, Koehler Leman J, Weitzner BD, Duran AM, Tilley DC, Elazar A, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=26325167"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=26325167&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;11&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2015&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;PLoS Comput Biol&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;e1004398&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publications-subjects/membrane-structure-prediction"&gt;Membrane Structure Prediction&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-type/application"&gt;Application&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;26325167&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/103"&gt;confirmed&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 13 Sep 2015 07:54:22 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9512 at https://www.rosettacommons.org</guid>
</item>
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<title>Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.</title>
<link/>https://www.rosettacommons.org/node/9239
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Kilambi KP, Pacella MS, Xu J, Labonte JW, Porter JR, Muthu P, Drew K, Kuroda D, Schueler-Furman O, Bonneau R, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=24123494"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=24123494&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;81&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2013&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Proteins&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2201-9&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;24123494&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/103"&gt;confirmed&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9239 at https://www.rosettacommons.org</guid>
</item>
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<title>Benchmarking and analysis of protein docking performance in Rosetta v3.2.</title>
<link/>https://www.rosettacommons.org/node/9307
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Chaudhury S, Berrondo M, Weitzner BD, Muthu P, Bergman H, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=21829626"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=21829626&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;6&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2011&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;PLoS One&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;e22477&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;21829626&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9307 at https://www.rosettacommons.org</guid>
</item>
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<title>Real-time PyMOL visualization for Rosetta and PyRosetta.</title>
<link/>https://www.rosettacommons.org/node/9305
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Baugh EH, Lyskov S, Weitzner BD, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=21857909"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=21857909&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;6&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2011&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;PLoS One&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;e21931&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;21857909&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9305 at https://www.rosettacommons.org</guid>
</item>
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<title>Rapid calculation of protein pKa values using Rosetta.</title>
<link/>https://www.rosettacommons.org/node/9271
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Kilambi KP, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=22947875"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=22947875&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;103&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2012&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Biophys J&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;587-95&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;22947875&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9271 at https://www.rosettacommons.org</guid>
</item>
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<title>Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex.</title>
<link/>https://www.rosettacommons.org/node/9261
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Xu J, Tack D, Hughes RA, Ellington AD, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=23680795"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=23680795&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;185&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2014&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;J Struct Biol&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;215-22&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;23680795&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9261 at https://www.rosettacommons.org</guid>
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<title>Using the RosettaSurface algorithm to predict protein structure at mineral surfaces.</title>
<link/>https://www.rosettacommons.org/node/9238
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Pacella MS, Koo da CE, Thottungal RA, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=24188775"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=24188775&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;532&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2013&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Methods Enzymol&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;343-66&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;24188775&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9238 at https://www.rosettacommons.org</guid>
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<title>Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.</title>
<link/>https://www.rosettacommons.org/node/9231
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Weitzner BD, Kuroda D, Marze N, Xu J, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=24519881"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=24519881&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;82&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2014&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Proteins&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;1611-23&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/107"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/108"&gt;NONE&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;24519881&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/104"&gt;pending&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 14:19:35 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">9231 at https://www.rosettacommons.org</guid>
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<title>CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock.</title>
<link/>https://www.rosettacommons.org/node/8670
 <description>&lt;div class="field field-name-field-pub-authors field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Authors:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Daily MD, Masica D, Sivasubramanian A, Somarouthu S, Gray JJ&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-link-to-article field-type-link-field field-label-above"&gt;&lt;div class="field-label"&gt;Link to article:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=15981262"&gt;http://www.ncbi.nlm.nih.gov/pubmed/?term=15981262&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-volume field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Volume:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;60&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-year field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Year:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;2005&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-source field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Source:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;Proteins&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pages field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;Pages:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;181-6&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-lab field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Lab:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-lab/gray"&gt;Gray&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-subject field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Subject:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publications-subjects/other-rosetta-papers"&gt;Other Rosetta Papers&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pub-type field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Publication Type:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/category/publication-type/method"&gt;Method&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-pubmed-id field-type-text field-label-above"&gt;&lt;div class="field-label"&gt;PubMed ID:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;15981262&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="field field-name-field-pub-status field-type-taxonomy-term-reference field-label-above"&gt;&lt;div class="field-label"&gt;Status:&amp;nbsp;&lt;/div&gt;&lt;div class="field-items"&gt;&lt;div class="field-item even"&gt;&lt;a href="/taxonomy/term/103"&gt;confirmed&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</description>
<pubdate>Sun, 15 Mar 2015 13:45:01 +0000</pubdate>
<dc:creator></dc:creator>
<guid ispermalink="false">8670 at https://www.rosettacommons.org</guid>
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