RosettaCommons - Kortemme

Servers & Related Software

Publication Subject:

Publication Type:

PubMed ID:

26335248

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22403064

Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.

Sun, 15 Mar 2015 19:11:10 +0000

Authors:

Kapp GT, Liu S, Stein A, Wong DT, Remenyi A, Yeh BJ, Fraser JS, Taunton J, Lim WA, Kortemme T

Link to article:

Volume:

109

Year:

2012

Source:

Proc Natl Acad Sci U S A

Pages:

5277-82

Lab:

Interface & Interface Design

Publication Subject:

Publication Type:

PubMed ID:

22403064

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23159126

Design of a phosphorylatable PDZ domain with peptide-specific affinity changes.

Sun, 15 Mar 2015 19:10:44 +0000

Authors:

Smith CA, Shi CA, Chroust MK, Bliska TE, Kelly MJ, Jacobson MP, Kortemme T

Link to article:

Volume:

Year:

2013

Source:

Structure

Pages:

54-64

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23159126

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=24244128

Computational protein design quantifies structural constraints on amino acid covariation.

Sun, 15 Mar 2015 19:10:18 +0000

Authors:

Ollikainen N, Kortemme T

Link to article:

Volume:

Year:

2013

Source:

PLoS Comput Biol

Pages:

e1003313

Lab:

Publication Subject:

Publication Type:

PubMed ID:

24244128

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25313039

Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition.

Sun, 15 Mar 2015 19:09:19 +0000

Authors:

Melero C, Ollikainen N, Harwood I, Karpiak J, Kortemme T

Link to article:

Volume:

111

Year:

2014

Source:

Proc Natl Acad Sci U S A

Pages:

15426-31

Lab:

Interface & Interface Design

Publication Subject:

Publication Type:

PubMed ID:

25313039

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=21789164

Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Smith CA, Kortemme T

Link to article:

Volume:

Year:

2011

Source:

PLoS One

Pages:

e20451

Lab:

Publication Subject:

Publication Type:

PubMed ID:

21789164

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23422426

Flexible backbone sampling methods to model and design protein alternative conformations.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Ollikainen N, Smith CA, Fraser JS, Kortemme T

Link to article:

Volume:

523

Year:

2013

Source:

Methods Enzymol

Pages:

61-85

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23422426

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23704889

Improvements to robotics-inspired conformational sampling in rosetta.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Stein A, Kortemme T

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e63090

Lab:

Publication Subject:

Loop Modeling

Publication Type:

PubMed ID:

23704889

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=16581371

Potential functions for hydrogen bonds in protein structure prediction and design.

Sun, 15 Mar 2015 13:45:01 +0000

Authors:

Morozov AV, Kortemme T

Link to article:

Volume:

Year:

2005

Source:

Adv Protein Chem

Pages:

1-38

Lab:

Publication Subject:

Energy function

Publication Type:

Review

PubMed ID:

16581371

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=17722975

Design of multi-specificity in protein interfaces.

Sun, 15 Mar 2015 13:45:01 +0000

Authors:

Humphris EL, Kortemme T

Link to article:

Volume:

Year:

2007

Source:

PLoS Comput Biol

Pages:

e164

Lab:

Interface & Interface Design

Publication Subject:

Publication Type:

PubMed ID:

17722975

Status: