RosettaCommons - Kuhlman

Publication Subject:

Publication Type:

PubMed ID:

25866491

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23139141

A comparison of successful and failed protein interface designs highlights the challenges of designing buried hydrogen bonds.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Stranges PB, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

Protein Sci

Pages:

74-82

Lab:

Publication Subject:

Protein Design

Publication Type:

PubMed ID:

23139141

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23741319

Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Kluwe C, Miklos AE, Jacak R, Lyskov S, Gray JJ, Georgiou G, Ellington AD, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

PLoS One

Pages:

e64363

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23741319

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23504819

Combined computational design of a zinc-binding site and a protein-protein interaction: one open zinc coordination site was not a robust hotspot for de novo ubiquitin binding.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Jha RK, Lewis SM, Thompson PM, Guntas G, Kuhlman B

Link to article:

Volume:

Year:

2013

Source:

Proteins

Pages:

1245-55

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23504819

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=23422428

Scientific benchmarks for guiding macromolecular energy function improvement.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, Baker D, Kuhlman B

Link to article:

Volume:

523

Year:

2013

Source:

Methods Enzymol

Pages:

109-43

Lab:

Publication Subject:

Publication Type:

PubMed ID:

23422428

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22223219

Computational protein design with explicit consideration of surface hydrophobic patches.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Jacak R, Leaver-Fay A, Kuhlman B

Link to article:

Volume:

Year:

2012

Source:

Proteins

Pages:

825-38

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22223219

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22092237

Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Der BS, Machius M, Miley MJ, Mills JL, Szyperski T, Kuhlman B

Link to article:

Volume:

134

Year:

2012

Source:

J Am Chem Soc

Pages:

375-85

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22092237

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25287625

Computational de novo design of a four-helix bundle protein-DND_4HB.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Murphy GS, Sathyamoorthy B, Der BS, Machius MC, Pulavarti SV, Szyperski T, Kuhlman B

Link to article:

Volume:

Year:

2014

Source:

Protein Sci

Pages:

Lab:

Publication Subject:

Publication Type:

PubMed ID:

25287625

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=25535392

Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B

Link to article:

Volume:

112

Year:

2015

Source:

Proc Natl Acad Sci U S A

Pages:

112-7

Lab:

Publication Subject:

Publication Type:

PubMed ID:

25535392

Status:

http://www.ncbi.nlm.nih.gov/pubmed/?term=22431978

Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design.

Sun, 15 Mar 2015 14:19:35 +0000

Authors:

Renfrew PD, Choi EJ, Bonneau R, Kuhlman B

Link to article:

Volume:

Year:

2012

Source:

PLoS One

Pages:

e32637

Lab:

Publication Subject:

Publication Type:

PubMed ID:

22431978

Status: